View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_24 (Length: 383)
Name: NF15217_high_24
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 37511208 - 37511546
Alignment:
| Q |
17 |
atttcgttaatcaataaaaagttaatacaaagaggaacataatcatagatattgtgattaaagtaagaattggttgctccaacgaaactatgagaaacca |
116 |
Q |
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| T |
37511208 |
atttcgttaatcaataaaaagttaatacaaagaggaacataatcatagatattgtgactaaagtaagaattggttgctccaacaaaactatgagaaacca |
37511307 |
T |
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| Q |
117 |
tgtttatttgcatctgactaaactttacctcaaagttacattgcaaattaaaaatgtgtataacaacactcttaacaatcatattaaattcggattgacc |
216 |
Q |
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| T |
37511308 |
tgtttatttttatctgactaaactttacctcaaagttt--------attaaaagt-----taatacctccctttt-aatcatattaaattcggattgacc |
37511393 |
T |
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| Q |
217 |
ttcaattctgccatacactgtagcattatattaaaagtcatacttgaaagacccatacaaacctttcaacatagcaatagttactattgtctattccgtc |
316 |
Q |
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| T |
37511394 |
ttcaattctgccatacactgtagcattatattaaaagtcatacttgaaagacccatacaaacctttcaacatagcaatagttactattgtctattccgtc |
37511493 |
T |
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| Q |
317 |
gtacagaagattaggtcaagggatttctctaagtaaaggtgagtttgtatgat |
369 |
Q |
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| T |
37511494 |
gtacagaagattaggtcaggggatttttctaagtaaaggtgagtttgtatgat |
37511546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 29462784 - 29462829
Alignment:
| Q |
17 |
atttcgttaatcaataaaaagttaatacaaagaggaacataatcat |
62 |
Q |
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| T |
29462784 |
atttcattaatcaatgaagagttaatacaaagaggaacataatcat |
29462829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 29462902 - 29462939
Alignment:
| Q |
135 |
taaactttacctcaaagttacattgcaaattaaaaatg |
172 |
Q |
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| T |
29462902 |
taaactttacttcaaagttacattgcaaatttaaaatg |
29462939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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