View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_28 (Length: 355)
Name: NF15217_high_28
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 13871488 - 13871813
Alignment:
| Q |
11 |
atcatcaaatgttactcttcccatagatagagattaatagtttgtttgttttacatcctacggctatactgacaagagtttgtggcaagccaannnnnnn |
110 |
Q |
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| T |
13871488 |
atcatcaaatgttactcttcccatagataga--ttaatagtttgtttgttttacatcctacggctataccgacaagagtttgtggcaagccaattttttt |
13871585 |
T |
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| Q |
111 |
cgatgaagtccaatggtgccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtcttgaa- |
209 |
Q |
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| T |
13871586 |
ggatgaagtccaatggtgccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatggaaagaa-tggacttggac |
13871684 |
T |
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| Q |
210 |
ttggattggatgtgtttagtaacttcatttagtcattgcagccaccaatttcatcaccattgaaatgatttcccatatatcctccaccattgatatactt |
309 |
Q |
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| T |
13871685 |
ttggattggatgtgtttagtaacttcatgtagtcattgcagccaccaatttcatcaccattgaaatgatttcccacatatcctacaccattgatatactt |
13871784 |
T |
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| Q |
310 |
tgtccaaatgtgtcctctatgtattagat |
338 |
Q |
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| T |
13871785 |
tttccaaatgtgtcctctatgtattagat |
13871813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 129 - 335
Target Start/End: Original strand, 13877965 - 13878168
Alignment:
| Q |
129 |
ccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtcttgaattggattggatgtgtttag |
228 |
Q |
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| T |
13877965 |
ccttgaacaaaattagggaaaattaatcgaa--ggctcttaaacttgtgaagtctataatatgaaaagaa-tggacttggattggattggatgtggtctg |
13878061 |
T |
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| Q |
229 |
taacttcatttagtcattgcagccaccaatttcatcaccattgaaatgatttcccatatatcctccaccattgatatactttgtccaaatgtgtcctcta |
328 |
Q |
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| T |
13878062 |
taacttcatgaagtcattgcagccaccaatttcatcaccattgaattgatttcccacatatcctccaccattgatctactttgtccaaatgtgtactcta |
13878161 |
T |
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| Q |
329 |
tgtatta |
335 |
Q |
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| T |
13878162 |
tgaatta |
13878168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 118 - 320
Target Start/End: Original strand, 13874148 - 13874343
Alignment:
| Q |
118 |
gtccaatggtgccttgtacacaattagcgaaaattaatctaattggctcttaaacttgtgaagtctatcatatgaaaagaaatggtcttgaattggattg |
217 |
Q |
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| T |
13874148 |
gtccaattgtgccttgaacaaaattagcgaaaattaatctaagta--tcttaaacttgtgtagtctatcatatgaaaagaaacggacttt-----gattg |
13874240 |
T |
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| Q |
218 |
gatgtgtttagtaacttcatttagtcattgcagccaccaatttcatcaccattgaaatgatttcccatatatcctccaccattgatatactttgtccaaa |
317 |
Q |
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| T |
13874241 |
gatgtggtcagtaacttcatgcagtcactgcagccaccaatttcatcgtcattgaattgatttcccatatatcatccaccattgatatactttgtccaaa |
13874340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 13880771 - 13880845
Alignment:
| Q |
246 |
tgcagccaccaatttcatcaccattgaaatgatttcccatatatcctccaccattgatatactttgtccaaatgt |
320 |
Q |
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| T |
13880771 |
tgcagctaccaatttcataaacattgaattgatttttcacaaatcctccaccattgatctactttgtcccaatgt |
13880845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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