View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15217_high_3 (Length: 651)
Name: NF15217_high_3
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_3 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 94 - 651
Target Start/End: Complemental strand, 51389586 - 51389029
Alignment:
| Q |
94 |
ccatttgttttattttgattcgcatcaacttaaaattacttatatcttttcttttttatcactccttctaaaacttctttgtttgatctttttatggatt |
193 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51389586 |
ccatttgttttattttgattcacatcatcttaaaattacttatatcttttcttttt-atcactctttctaaaacttctttgtttgatctttttatggatt |
51389488 |
T |
|
| Q |
194 |
tgcatttgcgagaatttaagcccctggtttgggnnnnnnnn-gctgactatttttcatggattatgtgattagcggaggttaaacctgaaagaagaatga |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
51389487 |
tgcatttgcgagaatttaagcccctggtttgggtttttttttgctgactatttttcatggattatgtgattaacggaggttaaacctgaaaggagaatga |
51389388 |
T |
|
| Q |
293 |
caagtcctgttacattactttccatctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgttataaatcttaggcatttaaaa |
392 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51389387 |
caagtcctgatacattactttccttctcttccttgactttagatgttcgtgaatgtgattgttacttgattatattgttataaatcttaggcatttaaaa |
51389288 |
T |
|
| Q |
393 |
tggaaattatgtaggtcagtatagaatcatcccaaagttagtctaacacaggtgttgttgtctttttatattttctgcatagttagttatattggttttg |
492 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51389287 |
ttgaaattatgtaggtcagtatagaatcatcccaaagttagtctaacacaagtgttgttgtctttttatattttctgcatagttagttatattggttttg |
51389188 |
T |
|
| Q |
493 |
gacagtttaggttctttacatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaatgatatatcttcatacattta |
592 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
51389187 |
gacagtttaggttctttgcatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaataatatatctttagacattta |
51389088 |
T |
|
| Q |
593 |
tagttagttaccctttcttttgtgcatcgttaaaatgttccaaggactcataccatata |
651 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51389087 |
taattagttaccctttcttttgtgcatcgttaaaatgttccaaggactcataccatata |
51389029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 15701580 - 15701631
Alignment:
| Q |
33 |
tgtgtatgattgcatatatagttgtaaaatcatctcttggttttcatttttt |
84 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
15701580 |
tgtgtatggttgtatatatagttgtaagatcatctctttgttttcctttttt |
15701631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 94 - 464
Target Start/End: Original strand, 770469 - 770838
Alignment:
| Q |
94 |
ccatttgttttattttgattcgcatcaacttaaaattacttatatcttttcttttttatcactccttctaaaacttctttgtttgatctttttatggatt |
193 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
770469 |
ccatttgttttattttgattcacatcatcttaaaattacttatatcttttcttttt-atcaccctgtctaaaacttctttgtttggcctttttatggatt |
770567 |
T |
|
| Q |
194 |
tgcatttgcgagaatttaagcccctggtttgggnnnnnnnngctgactatttttcatggattatgtgattagcggaggttaaacctgaaagaagaatgac |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||| |||||| | |
|
|
| T |
770568 |
tgcatttgcgagaatttaagcccctggtttgggtttttt--gctgactatttttcctggattatgtgattaacggagcttaaccctgaaaggagaatggc |
770665 |
T |
|
| Q |
294 |
aag-tcctgttacattactttccatctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgttataaatcttaggcatttaaaa |
392 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
770666 |
aaggtcctgatacattactttccttctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgctataaatcttaggcatataaaa |
770765 |
T |
|
| Q |
393 |
tggaaattatgtaggtcagtatagaatcat-cccaaagttagtctaacacaggtgttgttgtctttttatatt |
464 |
Q |
| |
|
| ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
770766 |
ttgaaattatgtaggtctatatagaatcatccccaaagttagtctaacacaagtgttgttgtctttttatatt |
770838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 8e-66; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 184 - 442
Target Start/End: Complemental strand, 8028334 - 8028078
Alignment:
| Q |
184 |
tttatggatttgcatttgcgagaatttaagcccctggtttgggnnnnnnnngctgactatttttcatggattatgtgattagcggaggttaaacctgaaa |
283 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
8028334 |
tttatggattttcatttgcgaggatttaagcccctggtttgggttgttt--gctgactattttcc-tggattatgtgattaatggaggttaaacctgaaa |
8028238 |
T |
|
| Q |
284 |
gaagaatgacaag-tcctgttacattactttccatctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgttataaatcttag |
382 |
Q |
| |
|
| |||||| |||| ||||| ||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| | |
|
|
| T |
8028237 |
ggagaatggcaaggtcctgatacattactttccttctcttcattgactttatacgttcgtgaatttgattgttacttgattatatttctataaatcttgg |
8028138 |
T |
|
| Q |
383 |
gcatttaaaatggaaattatgtaggtcagtatagaatcatcc-caaagttagtctaacaca |
442 |
Q |
| |
|
| ||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
8028137 |
gtatttaaaattgaaattatgtaggtta-tatagaatcatccgcaaagttagtctaacaca |
8028078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 297 - 402
Target Start/End: Original strand, 32663259 - 32663364
Alignment:
| Q |
297 |
tcctgttacattactttccatctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgttataaatcttaggcatttaaaatgga |
396 |
Q |
| |
|
||||| ||||||| ||| | | |||||||| | |||| || ||||||||||| |||||||||||| ||| || ||||||||||||||| |||||||| || |
|
|
| T |
32663259 |
tcctgatacattagtttgcttttcttcctttaatttataccttcgtgaatgttattgttacttgaatatttttttataaatcttaggcgtttaaaattga |
32663358 |
T |
|
| Q |
397 |
aattat |
402 |
Q |
| |
|
|||||| |
|
|
| T |
32663359 |
aattat |
32663364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 32663110 - 32663162
Alignment:
| Q |
97 |
tttgttttattttgattcgcatcaacttaaaattacttatatcttttcttttt |
149 |
Q |
| |
|
||||||||||| |||||| ||| | ||||||||||||||||||||| |||||| |
|
|
| T |
32663110 |
tttgttttattatgattcacattatcttaaaattacttatatctttccttttt |
32663162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 12513016 - 12513067
Alignment:
| Q |
33 |
tgtgtatgattgcatatatagttgtaaaatcatctcttggttttcatttttt |
84 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
12513016 |
tgtgtatggttgtatatatagttgtaatatcatctctttgttttcctttttt |
12513067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 350 - 461
Target Start/End: Original strand, 4351817 - 4351929
Alignment:
| Q |
350 |
attgttacttgattatattgttataaatcttaggcatttaaaatggaaattatgtaggtcagtatagaatcat-cccaaagttagtctaacacaggtgtt |
448 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||| | || |
|
|
| T |
4351817 |
attgttactttattacattgttataaatcttagacatttaaaattgaaattatgcaggtctttatagaatcatccccaaagttagtctaacacaattatt |
4351916 |
T |
|
| Q |
449 |
gttgtctttttat |
461 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4351917 |
tttgtctttttat |
4351929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 37616920 - 37616797
Alignment:
| Q |
94 |
ccatttgttttattttgattcgcatcaacttaaaattacttatatcttttcttttttatcactccttctaaaacttctttgtttgatctttttatggatt |
193 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||| ||||||||||||||||| || |||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
37616920 |
ccatttattttattttgattcacattttcttaaaattgtttatatcttttcttttt-attactctctctaacacttctttgtttgacatttttatggatt |
37616822 |
T |
|
| Q |
194 |
tgcatttgcgagaatttaagcccct |
218 |
Q |
| |
|
||||||||| ||||||||| ||||| |
|
|
| T |
37616821 |
tgcatttgcaagaatttaaacccct |
37616797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25901050 - 25900970
Alignment:
| Q |
1 |
attttaatttttaagcattttatttgtgttcctgtgtatgattgcatatatagttgtaaaatcatctcttggttttcattttt |
83 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
25901050 |
attttaatttttaagcattttatttgtgt--ctgtgtatgtgaccaactatagttgtaaaattatctcttggttttctttttt |
25900970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 19768367 - 19768490
Alignment:
| Q |
94 |
ccatttgttttattttgattcgcatcaacttaaaattacttatatcttttcttttttatcactccttctaaaacttctttgtttgatctttttatggatt |
193 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||| ||||||| ||| ||||||| ||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
19768367 |
ccatttattttattttgattcacattttcttaaaattgtttatatcattt-ttttttaacactctctctaacacttctttgtttgacatttttatggatt |
19768465 |
T |
|
| Q |
194 |
tgcatttgcgagaatttaagcccct |
218 |
Q |
| |
|
||||||||| ||||||||| ||||| |
|
|
| T |
19768466 |
tgcatttgcaagaatttaaacccct |
19768490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 442
Target Start/End: Complemental strand, 12572283 - 12572187
Alignment:
| Q |
350 |
attgttacttgattatattgttataaatcttaggcatttaaaatggaaattatgtag---gtcagtatagaatcat-cccaaagttagtctaacaca |
442 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| |
|
|
| T |
12572283 |
attgttactttattacattgttataaatcttagacatttaaaattaaaattatgcagagaatctttatagaatcatccccaaagttagtctaacaca |
12572187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 442
Target Start/End: Complemental strand, 13548747 - 13548651
Alignment:
| Q |
350 |
attgttacttgattatattgttataaatcttaggcatttaaaatggaaattatgtag---gtcagtatagaatcat-cccaaagttagtctaacaca |
442 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| |
|
|
| T |
13548747 |
attgttactttattacattgttataaatcttagacatttaaaattaaaattatgcagagaatctttatagaatcatccccaaagttagtctaacaca |
13548651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 29199944 - 29200002
Alignment:
| Q |
160 |
tctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccct |
218 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
29199944 |
tctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct |
29200002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 613
Target Start/End: Complemental strand, 12572052 - 12571942
Alignment:
| Q |
500 |
taggttctttacatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaatgatatatcttcatacatttatagttag |
599 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||| || |||| |||||||||| ||||| |||||||||||||||||||| ||| || || ||||| |
|
|
| T |
12572052 |
taggttctttgtagacaagcttttggtattttaaattca-atgtgtctttaaaaa-ttgaactcttaacaaatgatatatctttatatgttcatggttag |
12571955 |
T |
|
| Q |
600 |
ttaccctttctttt |
613 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
12571954 |
tta-cctttctttt |
12571942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 613
Target Start/End: Complemental strand, 13548516 - 13548406
Alignment:
| Q |
500 |
taggttctttacatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaatgatatatcttcatacatttatagttag |
599 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||| || |||| |||||||||| ||||| |||||||||||||||||||| ||| || || ||||| |
|
|
| T |
13548516 |
taggttctttgtagacaagcttttggtattttaaattca-atgtgtctttaaaaa-ttgaactcttaacaaatgatatatctttatatgttcatggttag |
13548419 |
T |
|
| Q |
600 |
ttaccctttctttt |
613 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
13548418 |
tta-cctttctttt |
13548406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 613
Target Start/End: Original strand, 4293442 - 4293552
Alignment:
| Q |
500 |
taggttctttacatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaatgatatatcttcatacatttatagttag |
599 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||| | | |||| |||||||||| ||||| |||||||||||||||||||| ||| || || ||||| |
|
|
| T |
4293442 |
taggttctttgcagacaagcttttggtattttaaa-ttcaatgtgtctttaaaaa-ttgaactcttaacaaatgatatatctttatatgttcatggttag |
4293539 |
T |
|
| Q |
600 |
ttaccctttctttt |
613 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
4293540 |
tta-cctttctttt |
4293552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 32282345 - 32282396
Alignment:
| Q |
33 |
tgtgtatgattgcatatatagttgtaaaatcatctcttggttttcatttttt |
84 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||| |||||| |||||| |
|
|
| T |
32282345 |
tgtgtatggttgtatatatagttgtaaaaccatctctttgttttcctttttt |
32282396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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