View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_30 (Length: 347)
Name: NF15217_high_30
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 4878349 - 4878020
Alignment:
| Q |
18 |
acaatattattaaattgatttgagtctcatgtaactagtttaaagatgaaggtgttcaataacacgcatacatacaataatccagaaattttggcaatgt |
117 |
Q |
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| T |
4878349 |
acaatattattaaattgatttgagtctcatgtaactagtttaaagatgaaggtgttcaataacacgcatacatacaataatccagaaattttggcaatgt |
4878250 |
T |
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| Q |
118 |
ttaattcatatacaactctaatatgcactcttacacctaacgtgggtcttgcttggatccaactctcacatattcatccttaatccagctgatgtcatgt |
217 |
Q |
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| T |
4878249 |
ttaattcatatacaactctaatatgcactcttacacctaacgtgggtcttgcttggatccaactctcacatattcatccttaatccagctgatgtcatgt |
4878150 |
T |
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| Q |
218 |
taaatgggcatgagttttactactaaaaaagctacctcaaagctggatgaagatgtccat------nnnnnnnnnnnnacatataaccattcagaaattt |
311 |
Q |
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| T |
4878149 |
taaatgggcatgagttttactact--aaaagctacctcaaagctggatgaagatgtccatgcacgcgcgcgcgtgcacacatataaccattcagaaattt |
4878052 |
T |
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| Q |
312 |
gacaatatgattgacttcaatatagctctagt |
343 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4878051 |
gacaatatgattgacttcaatatagctctagt |
4878020 |
T |
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