View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_40 (Length: 279)
Name: NF15217_high_40
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 29142403 - 29142649
Alignment:
| Q |
10 |
cacagaaaattgaaggtaaatttattgtcaatacaaaaggaaacattttcactgaggcagtagaaggtgtgttgatcacttcatggcttttggaggcact |
109 |
Q |
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| T |
29142403 |
cacagaaaattgaaggtaactttattgtcaatacaaaaggaaacattttcactgaggcagtagaaggtgtgttgatcacttcatggcttttggaggcact |
29142502 |
T |
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| Q |
110 |
ctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttcaaaatatttcttattcattactaactatgaaacatatataagaaacgt |
209 |
Q |
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| T |
29142503 |
ctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttcaaaatatttcttattcattactaactatgaaacatataaaagaaacgt |
29142602 |
T |
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| Q |
210 |
gtgtgcgcgcgcgcgtaaatgaatagatagaagatcttataatgtaacc |
258 |
Q |
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| T |
29142603 |
gtgt--gtgcgcgcgtaaatgaagagatagaagatcttataatgtaacc |
29142649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 29569486 - 29569394
Alignment:
| Q |
80 |
gttgatcacttcat--ggcttttggaggcactctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttcaaaatattt |
170 |
Q |
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| T |
29569486 |
gttgatcacttcatatggctttcggtgggattctaatagctgaaacaaacaatgtcatcacaagttttgtcagttttctttctcaaaatattt |
29569394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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