View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15217_high_49 (Length: 228)
Name: NF15217_high_49
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_49 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7619277 - 7619050
Alignment:
| Q |
1 |
tcatcgataggattacaggcacaactaactcattaatgagtagacttgttgaatcaggttnnnnnnncgatgtgattttgtcttaccctgaacttgacgt |
100 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
7619277 |
tcattgataggatgacaggcacaactaacaaattaatgagtagacttgttgaatcaggttgtgaggtcgatgtgattttgtcttaccctgaacttgacct |
7619178 |
T |
|
| Q |
101 |
ctaaatttatgagataccatggagacctacaatttccagacatcatttattacgttgtaattctgtgttgaaactttcctctaagccactactataaatt |
200 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
7619177 |
ccaaatttatgagataccctggagacctacaattttcagacatcatttattacgttgtaattctgtgttgaaacttttctctgagccactactataaatt |
7619078 |
T |
|
| Q |
201 |
catgttaccattgttttgtttggacatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7619077 |
catgttaccattgttttgtttggacatt |
7619050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 16504453 - 16504355
Alignment:
| Q |
102 |
taaatttatgagataccatggagacctacaatttccagacatcatttattacgttgtaattctgtgttgaaactttcctctaagccactactataaattc |
201 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||| |||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
16504453 |
taaatttatgagataccattgagacct------tccagacatcatttatttcattgtaattttgtgtttaaacttgcctctaagccactcttataaattc |
16504360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University