View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_5 (Length: 593)
Name: NF15217_high_5
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 36 - 578
Target Start/End: Original strand, 40522405 - 40522948
Alignment:
| Q |
36 |
ctatatgcaatgttcaaactaaagtatgtaattatcatagtcatctaaattccagtttataaatggaaaataagacacattnnnnnnnn-tacaatttag |
134 |
Q |
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| T |
40522405 |
ctatatgcaatgttcaaactaaagtatgtaattatcatagtcatctaaattccagtttataaatggaaaataagacacattaaaaaaaaatacaatttag |
40522504 |
T |
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| Q |
135 |
gatgtctgagctattatacaaagaccacccttctcaagnnnnnnntaactgtcatagtcagtgcacaaagttgagagccaacaaaatccttcaaatgtga |
234 |
Q |
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| T |
40522505 |
gatgtctgagctattatacaaagaccacccttctcaagaaaaaaataactgtcatagtcagtgcacaaagttgagagccaacaaaatccttcaaatgtga |
40522604 |
T |
|
| Q |
235 |
acaaatgtagtaatggataagttgatttcgacatagcactgacactacaagttgaaggtgtgtctgagtgcccaacactcgtaaagttacatttaatcac |
334 |
Q |
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| T |
40522605 |
acaaatgtagtaatggataagttgatttcgacatagcactgacactgcaagttgaaggtgtgtctgagtgcccaacactcgtaaagttacatttaatcac |
40522704 |
T |
|
| Q |
335 |
ttatttttcatattataatttatgtctacgtgtcaatgtcaatgttgttttcaatgcatgtgcaagtgtttcataggttgatttacaatacccatacaac |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40522705 |
ttatttttcatattataatttatgtctacgtgtcaatgtcaatgttgttttcaatgcatgtgcaagtgtttcataggttgatttacaatacccatacaac |
40522804 |
T |
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| Q |
435 |
aaggctttcttctttgcctgcagatttaaggattggttggcgaccactgataagttcaagaagaaccacgccgaaactgaagacatctgactcaatagag |
534 |
Q |
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| T |
40522805 |
aaggctttcttctttgcctgcagatttaaggattggttggcgaccactgataagttcaagaagaaccacgccgaaactgaagacatctgactcaatagag |
40522904 |
T |
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| Q |
535 |
gatctcccaacaattgcatactcaggtgcaaaatagccaaatgt |
578 |
Q |
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| T |
40522905 |
gatctcccaacaattgcatactcaggtgcaaaatagccaaatgt |
40522948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 423 - 578
Target Start/End: Complemental strand, 21602141 - 21601986
Alignment:
| Q |
423 |
tacccatacaacaaggctttcttctttgcctgcagatttaaggattggttggcgaccactgataagttcaagaagaaccacgccgaaactgaagacatct |
522 |
Q |
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|||||||| ||| |||||||||||||| || | || |||| |||| || || ||||| ||||||| || ||||||||||| || ||||| ||||| ||| |
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| T |
21602141 |
tacccatataacgaggctttcttcttttccggtagttttatggataggatgtcgacccgtgataagctcgagaagaaccacaccaaaactaaagacgtct |
21602042 |
T |
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| Q |
523 |
gactcaatagaggatctcccaacaattgcatactcaggtgcaaaatagccaaatgt |
578 |
Q |
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|| |||| ||||| ||| |||| ||| ||||||||||||||||||||||||||||| |
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| T |
21602041 |
gattcaagagaggctctaccaataatcgcatactcaggtgcaaaatagccaaatgt |
21601986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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