View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_53 (Length: 216)
Name: NF15217_high_53
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 45104042 - 45104222
Alignment:
| Q |
18 |
agagtataagtaataataataagaggagtttagaaccaaaagcaaaagctagtaaccaaactggaaagaagagtagaagtggttctcagtgtttggatca |
117 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45104042 |
agagtagaagtaataataataagaggagtttggaaccaaaagcaaaagctagtaaccaaactggaaagaagagtagaagtggttctcagtgtttggatca |
45104141 |
T |
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| Q |
118 |
cattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcactttcagctactattcctggcttgaagaa |
198 |
Q |
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| T |
45104142 |
cattatggctgagagaaaaagaagattggaactatcacaaaagttcattgcactttcagctactattcctggcttgaagaa |
45104222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 45130668 - 45130848
Alignment:
| Q |
18 |
agagtataagtaataataataagaggagtttagaaccaaaagcaaaagctagtaaccaaactggaaagaagagtagaagtggttctcagtgtttggatca |
117 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
45130668 |
agagtagaagtaataataataagaggagtttggaaccaaaagcaaaagctagtaaccaaactggaaagaagagtagaagtggttctcagtatctggatca |
45130767 |
T |
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| Q |
118 |
cattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcactttcagctactattcctggcttgaagaa |
198 |
Q |
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| T |
45130768 |
cattatggctgagagaaaaaggagactagaattatcacagaagttcattgcactttcagctactattcctggcttaaagaa |
45130848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 1841357 - 1841253
Alignment:
| Q |
90 |
gtagaagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcactttcagctactattcctgg |
189 |
Q |
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||||||| |||| |||||| | ||||| || ||||| ||||||||| ||||| |||| | || | || ||||||||||||||||| |||||||| || |
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| T |
1841357 |
gtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggagttgtctgagaaattcattgcactttcagccactattcccgg |
1841258 |
T |
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| Q |
190 |
cttga |
194 |
Q |
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||||| |
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| T |
1841257 |
cttga |
1841253 |
T |
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