View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15217_high_7 (Length: 549)

Name: NF15217_high_7
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15217_high_7
NF15217_high_7
[»] chr5 (27 HSPs)
chr5 (273-432)||(14880848-14881007)
chr5 (400-517)||(8074453-8074570)
chr5 (400-542)||(4592863-4593005)
chr5 (395-506)||(2464666-2464777)
chr5 (400-540)||(40612640-40612780)
chr5 (400-517)||(546040-546156)
chr5 (19-84)||(14880635-14880700)
chr5 (394-506)||(28591129-28591241)
chr5 (395-506)||(18004635-18004746)
chr5 (395-517)||(2466778-2466900)
chr5 (406-492)||(18400198-18400284)
chr5 (425-506)||(19182977-19183058)
chr5 (400-505)||(21069291-21069396)
chr5 (395-506)||(9538064-9538175)
chr5 (423-506)||(19186235-19186318)
chr5 (423-506)||(32640313-32640396)
chr5 (461-511)||(14881010-14881060)
chr5 (418-505)||(25590451-25590537)
chr5 (408-506)||(9537033-9537130)
chr5 (435-498)||(544685-544748)
chr5 (435-505)||(32641742-32641812)
chr5 (193-234)||(14880809-14880850)
chr5 (434-506)||(16611764-16611836)
chr5 (458-542)||(8075812-8075896)
chr5 (450-503)||(4594118-4594170)
chr5 (459-503)||(13483174-13483218)
chr5 (406-506)||(16979000-16979100)
[»] chr8 (12 HSPs)
chr8 (400-542)||(32898424-32898566)
chr8 (400-542)||(10407563-10407705)
chr8 (400-542)||(35177397-35177539)
chr8 (400-517)||(35178808-35178925)
chr8 (394-542)||(1952949-1953096)
chr8 (400-497)||(41754000-41754097)
chr8 (395-506)||(41754810-41754920)
chr8 (417-506)||(45476181-45476270)
chr8 (435-506)||(5965457-5965528)
chr8 (395-505)||(30134563-30134673)
chr8 (406-503)||(5738041-5738138)
chr8 (450-506)||(9625242-9625298)
[»] chr7 (29 HSPs)
chr7 (395-542)||(43457454-43457601)
chr7 (394-542)||(35729065-35729213)
chr7 (400-506)||(48646051-48646157)
chr7 (400-506)||(48777258-48777364)
chr7 (408-542)||(10899052-10899186)
chr7 (406-542)||(35727707-35727842)
chr7 (391-542)||(7259663-7259814)
chr7 (400-506)||(30925023-30925129)
chr7 (400-502)||(44333141-44333243)
chr7 (400-506)||(44334464-44334570)
chr7 (400-542)||(7258277-7258419)
chr7 (395-540)||(48647424-48647569)
chr7 (395-506)||(45583681-45583792)
chr7 (396-506)||(12223714-12223824)
chr7 (400-505)||(46286505-46286610)
chr7 (395-506)||(8375598-8375709)
chr7 (400-506)||(48788687-48788793)
chr7 (400-505)||(42477383-42477487)
chr7 (410-506)||(8374926-8375022)
chr7 (450-517)||(13578325-13578391)
chr7 (451-542)||(45584475-45584566)
chr7 (406-506)||(39708111-39708211)
chr7 (451-506)||(44530626-44530681)
chr7 (400-505)||(8048800-8048905)
chr7 (456-517)||(33607627-33607688)
chr7 (396-498)||(21062815-21062917)
chr7 (438-517)||(44529068-44529147)
chr7 (452-506)||(32793225-32793279)
chr7 (406-506)||(19433949-19434049)
[»] chr2 (22 HSPs)
chr2 (393-542)||(17330209-17330358)
chr2 (400-506)||(31091542-31091648)
chr2 (400-506)||(32766254-32766360)
chr2 (400-517)||(31090166-31090283)
chr2 (400-505)||(32764940-32765045)
chr2 (400-542)||(2910102-2910244)
chr2 (400-542)||(7073641-7073783)
chr2 (440-517)||(14704048-14704125)
chr2 (406-506)||(24459461-24459561)
chr2 (400-506)||(24458062-24458168)
chr2 (401-506)||(34037688-34037793)
chr2 (406-540)||(40000315-40000449)
chr2 (400-506)||(39015007-39015113)
chr2 (423-506)||(17466843-17466926)
chr2 (400-506)||(2911506-2911612)
chr2 (400-501)||(5915012-5915113)
chr2 (400-506)||(39016398-39016502)
chr2 (406-517)||(34582674-34582785)
chr2 (407-506)||(38985004-38985103)
chr2 (458-506)||(21733786-21733834)
chr2 (441-516)||(17466084-17466159)
chr2 (406-506)||(38853763-38853863)
[»] chr3 (31 HSPs)
chr3 (400-517)||(17701923-17702040)
chr3 (400-506)||(2592022-2592128)
chr3 (395-517)||(17700515-17700637)
chr3 (400-517)||(55388075-55388192)
chr3 (400-540)||(2591629-2591769)
chr3 (400-517)||(36278954-36279071)
chr3 (400-506)||(48572987-48573093)
chr3 (400-541)||(52318297-52318438)
chr3 (395-542)||(52316976-52317123)
chr3 (429-506)||(11773066-11773143)
chr3 (400-506)||(48808366-48808474)
chr3 (406-506)||(45600954-45601053)
chr3 (395-505)||(34263802-34263912)
chr3 (400-506)||(55389484-55389590)
chr3 (406-506)||(33428450-33428550)
chr3 (437-517)||(36280321-36280401)
chr3 (442-506)||(48574474-48574538)
chr3 (407-506)||(20464078-20464177)
chr3 (406-517)||(47118055-47118166)
chr3 (400-506)||(19114535-19114641)
chr3 (434-506)||(53959115-53959187)
chr3 (395-493)||(53957672-53957769)
chr3 (406-506)||(47075366-47075466)
chr3 (401-542)||(50753820-50753961)
chr3 (400-506)||(19115162-19115267)
chr3 (400-473)||(19331110-19331183)
chr3 (437-506)||(33427791-33427859)
chr3 (420-497)||(47427882-47427959)
chr3 (435-506)||(49261552-49261620)
chr3 (437-505)||(3671077-3671145)
chr3 (478-506)||(48809669-48809697)
[»] chr1 (20 HSPs)
chr1 (394-542)||(32665749-32665897)
chr1 (400-542)||(9339648-9339790)
chr1 (400-517)||(7945558-7945675)
chr1 (395-540)||(10332983-10333128)
chr1 (412-506)||(7944169-7944263)
chr1 (400-506)||(10333201-10333307)
chr1 (421-506)||(9341040-9341125)
chr1 (395-542)||(52439476-52439619)
chr1 (400-506)||(52440574-52440680)
chr1 (393-506)||(5782409-5782522)
chr1 (425-506)||(5783124-5783205)
chr1 (400-505)||(6612421-6612526)
chr1 (450-506)||(6613994-6614050)
chr1 (450-506)||(22856732-22856788)
chr1 (423-505)||(534574-534655)
chr1 (437-506)||(3117688-3117757)
chr1 (425-506)||(11060799-11060880)
chr1 (445-506)||(25037925-25037986)
chr1 (445-506)||(25043137-25043198)
chr1 (408-500)||(44019996-44020088)
[»] scaffold0034 (1 HSPs)
scaffold0034 (400-506)||(116057-116163)
[»] chr6 (4 HSPs)
chr6 (400-506)||(30748001-30748107)
chr6 (406-505)||(31218963-31219062)
chr6 (406-506)||(31219175-31219275)
chr6 (394-506)||(23507945-23508056)
[»] chr4 (19 HSPs)
chr4 (400-542)||(42278051-42278193)
chr4 (400-506)||(47874566-47874672)
chr4 (406-506)||(53771064-53771164)
chr4 (400-506)||(47878499-47878605)
chr4 (391-504)||(31844715-31844828)
chr4 (401-506)||(26172957-26173062)
chr4 (423-505)||(54574450-54574532)
chr4 (434-540)||(4701801-4701907)
chr4 (406-517)||(48740024-48740135)
chr4 (406-506)||(4703232-4703332)
chr4 (450-506)||(26170692-26170748)
chr4 (406-502)||(53770341-53770437)
chr4 (408-506)||(39868932-39869028)
chr4 (400-503)||(39870692-39870795)
chr4 (400-479)||(42391930-42392009)
chr4 (430-506)||(2786253-2786329)
chr4 (458-506)||(19050298-19050346)
chr4 (445-504)||(54574822-54574881)
chr4 (459-542)||(50694810-50694893)
[»] scaffold0039 (2 HSPs)
scaffold0039 (401-503)||(74331-74433)
scaffold0039 (400-506)||(79075-79181)
[»] scaffold0767 (1 HSPs)
scaffold0767 (450-506)||(5651-5707)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 273 - 432
Target Start/End: Original strand, 14880848 - 14881007
Alignment:
Q  273 tgcgtagatttaaatttcaaatgctctaccatcatctatagttttatccgttcgctttgagagattaatctctacagttgcacaaatatgatatcggttn 372  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||     
T  14880848 tgcgtagatttaaatcttaaatgctctaccatcatctatagttttatccattcgctttgagagattaatctctacagttgcacaaatatgataccggtta 14880947  T
Q  373 nnnnnntgcacataattcttgaagagaaaataatcactttagtccctgattctgcaactc 432  Q
          |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14880948 aaaaaatgcacataattcttgaagagcaaataatcactttagtccctgattctgcaactc 14881007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 400 - 517
Target Start/End: Original strand, 8074453 - 8074570
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||||||| |||| ||| |||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 8074552  T
Q  500 actttagatcctgacgtt 517  Q
    ||||||| ||||||||||    
T  8074553 actttagttcctgacgtt 8074570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 4592863 - 4593005
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||||||| || | ||| |||||||||| |||| ||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 4592962  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  4592963 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 395 - 506
Target Start/End: Original strand, 2464666 - 2464777
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| ||||||||||| ||||||||||| ||| |||||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||| ||    
T  2464666 agagcaaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcacttacg 2464765  T
Q  495 ttatcactttag 506  Q
    ||||||||||||    
T  2464766 ttatcactttag 2464777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 400 - 540
Target Start/End: Complemental strand, 40612780 - 40612640
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||||||| |||| ||||||||||| ||||||| ||||| ||||||||| ||| |||  | |||||||||||||||||||||||    
T  40612780 aaatagtcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaatacagatattttcctgactctgcacttccgttatc 40612681  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgat 540  Q
    ||||||  ||||||||||       ||||||||||||||||    
T  40612680 actttaattcctgacgttaaaaaaatctgttaagtgatgat 40612640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 517
Target Start/End: Complemental strand, 546156 - 546040
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||||| |||| |||| ||| ||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||||||||||||||||    
T  546156 aaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatc 546058  T
Q  500 actttagatcctgacgtt 517  Q
    |||||||  |||||||||    
T  546057 actttagtccctgacgtt 546040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 14880635 - 14880700
Alignment:
Q  19 gaagtttcatatagattttaattatcgtggaccacctaacccacatatataatattaaacttctct 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14880635 gaagtttcatatagattttaattatcgtggaccacctaacccacatatataatattaaacttctct 14880700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 394 - 506
Target Start/End: Complemental strand, 28591241 - 28591129
Alignment:
Q  394 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 493  Q
    ||||| ||||| |||||||  ||||||| |||||| ||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||    
T  28591241 aagagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcc 28591142  T
Q  494 gttatcactttag 506  Q
     ||||||||||||    
T  28591141 tttatcactttag 28591129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 506
Target Start/End: Original strand, 18004635 - 18004746
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||||| |||||||||||||| |||||| |||||||||||| | ||| ||  |||||||||||| ||||| | |||  ||||||||||||||||    
T  18004635 agagtaaataattactttagtccctgactctgcacctcactgtcacaaaagtctatagcttaggattaaatacaaagaggtctatgactctgcacttccg 18004734  T
Q  495 ttatcactttag 506  Q
    ||||||||||||    
T  18004735 ttatcactttag 18004746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 517
Target Start/End: Complemental strand, 2466900 - 2466778
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| ||||||| ||| |||| |||||| ||| || |||||||||||  ||| | ||||||||| | |||||||||||| ||||||||||||||    
T  2466900 agagcaaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccg 2466801  T
Q  495 ttatcactttagatcctgacgtt 517  Q
    ||||||||||||  |||||||||    
T  2466800 ttatcactttagtccctgacgtt 2466778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 18400198 - 18400284
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttc 492  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||| | ||| ||||| |||||||||||||||    
T  18400198 tcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcacttc 18400284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 19182977 - 19183058
Alignment:
Q  425 tgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||| ||| ||||||||||||||  ||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  19182977 tgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttag 19183058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 21069291 - 21069396
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||| |||| |||||| |||  ||||||| |||||  ||||| ||||||||| |||||||||||| |||||||||||||| ||| ||    
T  21069291 aaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcacttctgttttc 21069390  T
Q  500 acttta 505  Q
    ||||||    
T  21069391 acttta 21069396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 506
Target Start/End: Complemental strand, 9538175 - 9538064
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| ||||||| |||||||| |||||| |||  ||||| |||||||| ||||| ||||||||| ||||| ||||| |||| | ||||||||||    
T  9538175 agagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccg 9538076  T
Q  495 ttatcactttag 506  Q
    |||||| |||||    
T  9538075 ttatcattttag 9538064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 506
Target Start/End: Complemental strand, 19186318 - 19186235
Alignment:
Q  423 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||| ||| | ||||||||||||| ||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||    
T  19186318 tctgcatctcccagtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcactttag 19186235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 506
Target Start/End: Original strand, 32640313 - 32640396
Alignment:
Q  423 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||| |||||||||||||||| |||| ||| ||||||||| |||||||||||||| |||||  ||||| |||||||||||||    
T  32640313 tctgcacctcactgtcacataggaccataactcaggattaaatacaaataagtccctaactctaaacttctgttatcactttag 32640396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 14881010 - 14881060
Alignment:
Q  461 taaacacaaataagtccctgactctgcacttccgttatcactttagatcct 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14881010 taaacacaaataagtccctgactctgcacttccgttatcactttagttcct 14881060  T

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Target: chr5; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 418 - 505
Target Start/End: Original strand, 25590451 - 25590537
Alignment:
Q  418 ctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||| |||||| ||| ||||||||||||||| |||||  |||||||| ||||||||||| |||| |||||||||| ||||||||||||    
T  25590451 ctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctgattctgcacttctgttatcacttta 25590537  T

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Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 408 - 506
Target Start/End: Original strand, 9537033 - 9537130
Alignment:
Q  408 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||||||| | |||||| ||| ||||||||||||||  |||||||| |||||| ||||| |||| | ||||| ||||||||| ||||||||||||    
T  9537033 actttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagt-catgactgtgcacttccattatcactttag 9537130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 498
Target Start/End: Original strand, 544685 - 544748
Alignment:
Q  435 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttat 498  Q
    ||||| |||||||  ||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  544685 tgtcagataggtctctgactcaggattaaatacaaataagtcactgactctgcacttccgttat 544748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 505
Target Start/End: Complemental strand, 32641812 - 32641742
Alignment:
Q  435 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||| ||||||| | ||| | ||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  32641812 tgtcacgtaggtcccttactcaagattaaatacaaataagttgctgactctgcacttccgttatcacttta 32641742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 14880809 - 14880850
Alignment:
Q  193 gtaatactagttacaattacaatacgaccctaatggagatgc 234  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  14880809 gtaatactagttacaattacaatacgacactaatggagatgc 14880850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 506
Target Start/End: Original strand, 16611764 - 16611836
Alignment:
Q  434 ctgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||||||||||  ||||| ||||||||| ||||| ||| | |||| | ||||||||||||||||||||||    
T  16611764 ctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttag 16611836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 542
Target Start/End: Complemental strand, 8075896 - 8075812
Alignment:
Q  458 gattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    ||||||| ||||| ||||  |||| ||||||||| ||||||||||||||  |||||||||       ||||||||||||||||||    
T  8075896 gattaaatacaaaaaagtatctgattctgcactttcgttatcactttagtccctgacgtttaaaaaatctgttaagtgatgatgt 8075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 503
Target Start/End: Complemental strand, 4594170 - 4594118
Alignment:
Q  450 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactt 503  Q
    ||||| ||||||||| |||||||||||  ||||||||||||||| |||||||||    
T  4594170 tgactcaggattaaatacaaataagtca-tgactctgcacttccattatcactt 4594118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 503
Target Start/End: Complemental strand, 13483218 - 13483174
Alignment:
Q  459 attaaacacaaataagtccctgactctgcacttccgttatcactt 503  Q
    |||||| ||||| ||||| |||||| |||||||||||||||||||    
T  13483218 attaaatacaaacaagtctctgactttgcacttccgttatcactt 13483174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 506
Target Start/End: Original strand, 16979000 - 16979100
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||||||| ||| | |||| ||  ||| |||| |||||  ||||| || ||||||  ||||||||||||| |||||| |||| |||||||| ||||    
T  16979000 tcactttagtccttgactttgcaccttgctgccacaaaggtcattgactcagaattaaatgcaaataagtccctaactctgtacttacgttatcatttta 16979099  T
Q  506 g 506  Q
    |    
T  16979100 g 16979100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 400 - 542
Target Start/End: Complemental strand, 32898566 - 32898424
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32898566 aaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttatc 32898467  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  32898466 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 400 - 542
Target Start/End: Complemental strand, 10407705 - 10407563
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  10407705 aaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtccataactttgcacttccgttatc 10407606  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    ||||||| ||||||||||       ||||||||||||||||||    
T  10407605 actttagttcctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 35177397 - 35177539
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||| |||||||||| |||||||| ||| ||||||||||||||| |||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  35177397 aaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatc 35177496  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  35177497 actttagtccctgacgttaaaataatctgttaagtgatgatgt 35177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 517
Target Start/End: Complemental strand, 35178925 - 35178808
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| |||||||| ||||||  || |||||| || ||||| ||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  35178925 aaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgttatc 35178826  T
Q  500 actttagatcctgacgtt 517  Q
    |||||||  |||||||||    
T  35178825 actttagtccctgacgtt 35178808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 542
Target Start/End: Complemental strand, 1953096 - 1952949
Alignment:
Q  394 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 493  Q
    ||||| ||||| ||||||||||||||||||||||| |||  ||||| |||| ||  ||||| ||||||| | |||||||||||  |||||||| ||||||    
T  1953096 aagagtaaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtctatgactctgtacttcc 1952998  T
Q  494 gttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||||||||   ||||||||       ||||||||||||||||||    
T  1952997 gttatcactttagtctctgacgttaaataaatctgttaagtgatgatgt 1952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 41754000 - 41754097
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgtta 497  Q
    ||||| ||||||||||||||| ||||||| ||  ||||||||||||||| ||||| ||||||||| | ||| |||||||||||||| ||||| |||||    
T  41754000 aaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgactctacactttcgtta 41754097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 506
Target Start/End: Complemental strand, 41754920 - 41754810
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| |||||||| ||| |||||||||| ||| ||||||||||| ||  ||||| ||||||||| ||||| |||| ||||||||| ||||||||    
T  41754920 agagcaaatagtcactttaatcc-tgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccg 41754822  T
Q  495 ttatcactttag 506  Q
    |||| |||||||    
T  41754821 ttattactttag 41754810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 506
Target Start/End: Original strand, 45476181 - 45476270
Alignment:
Q  417 cctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||||| || ||| |||| | | |||||||||| | || |||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  45476181 cctgattcttcatctcgctgttagaaaggtccatgattcagaattaaatacaaataagtctctgactctgcacttctgttatcactttag 45476270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 5965528 - 5965457
Alignment:
Q  435 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||| | |||| ||||| ||||||||| ||||| |||||  ||||||||||||||||||||||||||||    
T  5965528 tgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttag 5965457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 30134563 - 30134673
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| |||||||||||||||||| | | |||||| ||| |||||||| ||||||   ||| | ||||||| ||||| ||||   |||||||||||||| |    
T  30134563 agagcaaataatcactttagtccttaactctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagtgtgtgactctgcacttctg 30134662  T
Q  495 ttatcacttta 505  Q
    |||||||||||    
T  30134663 ttatcacttta 30134673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 406 - 503
Target Start/End: Complemental strand, 5738138 - 5738041
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactt 503  Q
    |||||||||| ||||| | ||||  ||  ||| |||||||||||||||| | ||||||| ||||| ||||   |||||||| ||||||||||||||||    
T  5738138 tcactttagttcctgactttgcatatcgttgtgacataggtccatgactcaagattaaatacaaagaagttattgactctgtacttccgttatcactt 5738041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 506
Target Start/End: Original strand, 9625242 - 9625298
Alignment:
Q  450 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||||||||||||||||  ||| | ||| | ||||||||| ||||||||||||    
T  9625242 tgacttaggattaaacacaaagtagtacttgaatatgcacttccattatcactttag 9625298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 395 - 542
Target Start/End: Original strand, 43457454 - 43457601
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||    
T  43457454 agagaaaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccg 43457553  T
Q  495 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||||||| || |||||||       ||||||||||||||||||    
T  43457554 ttatcactttagttcatgacgttaagttattctgttaagtgatgatgt 43457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 394 - 542
Target Start/End: Complemental strand, 35729213 - 35729065
Alignment:
Q  394 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 493  Q
    ||||| ||||| |||||||| ||||||||| |||| ||| ||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||    
T  35729213 aagagcaaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgcacttcc 35729114  T
Q  494 gttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    | ||||||| |||  |||||| ||       ||||||||||||||||||    
T  35729113 gctatcactgtagtccctgacattaaataaatctgttaagtgatgatgt 35729065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 48646051 - 48646157
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| |||||||| | |||| ||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatc 48646150  T
Q  500 actttag 506  Q
    |||||||    
T  48646151 actttag 48646157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 48777258 - 48777364
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||| ||||||||||| ||| |||||||||| |||| ||||| | ||||||| |||||||| |||||||||||||||||||||||||    
T  48777258 aaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttatc 48777357  T
Q  500 actttag 506  Q
    |||||||    
T  48777358 actttag 48777364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 408 - 542
Target Start/End: Complemental strand, 10899186 - 10899052
Alignment:
Q  408 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttaga 507  Q
    ||||| |||||||| |||||| ||| ||||||||||| ||| ||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||||     
T  10899186 actttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 10899087  T
Q  508 tcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
     |||||||||       ||||||||||||||||||    
T  10899086 ccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 406 - 542
Target Start/End: Original strand, 35727707 - 35727842
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||  ||||||| |||||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||| |||||||||||| |||||||||||||||    
T  35727707 tcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgttatcacttta 35727806  T
Q  506 gatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    | ||||||||||       ||||||||||||||||||    
T  35727807 g-tcctgacgttaaaaatctctgttaagtgatgatgt 35727842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 391 - 542
Target Start/End: Complemental strand, 7259814 - 7259663
Alignment:
Q  391 ttgaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcact 490  Q
    |||||||| ||||| |||||||| || |||||| || | ||| ||||||||| ||||  ||| | ||||||||| |||||||||||||||||||| ||||    
T  7259814 ttgaagagtaaatagtcactttaatcgctgattttgtagctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacact 7259715  T
Q  491 tccgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    ||||||||||||||||  |||||||||       ||||||||||||||||||    
T  7259714 tccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 30925129 - 30925023
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||| |||||||||||||| ||| | ||||||||||||| ||||| ||||||||| ||||||||||| |||||| ||||||||||||||     
T  30925129 aaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttatt 30925030  T
Q  500 actttag 506  Q
    |||||||    
T  30925029 actttag 30925023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 502
Target Start/End: Original strand, 44333141 - 44333243
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| |||||||| |||||| ||| ||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  500 act 502  Q
    |||    
T  44333241 act 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 44334570 - 44334464
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||| |||||||||||| ||| |||| |||||||||| ||||| | ||||||| | |||||||||||||||||||||||||| |||||    
T  44334570 aaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttccattatc 44334471  T
Q  500 actttag 506  Q
    |||||||    
T  44334470 actttag 44334464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 7258277 - 7258419
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| |||||||| ||| || |||  |||||||||||||| | ||| ||||||||| ||||||||||| ||||||||||||||| ||||||    
T  7258277 aaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttatc 7258376  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  7258377 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 395 - 540
Target Start/End: Complemental strand, 48647569 - 48647424
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| ||||||||| |||||||||| || ||| || |||||||||||| ||||| ||||||||| ||||||||||| || |||||||||||  |    
T  48647569 agagcaaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttg 48647470  T
Q  495 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgat 540  Q
    ||||||||||||  |||||||||       ||||||||||||||||    
T  48647469 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgat 48647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 395 - 506
Target Start/End: Original strand, 45583681 - 45583792
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| |||||||||||||||||||||||  || || |||||||||||| ||||| || |||||| ||| |||||| ||||| ||||||||||||    
T  45583681 agagcaaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcacttccg 45583780  T
Q  495 ttatcactttag 506  Q
    ||||||||||||    
T  45583781 ttatcactttag 45583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 396 - 506
Target Start/End: Complemental strand, 12223824 - 12223714
Alignment:
Q  396 gagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgt 495  Q
    ||||||||  ||||||||||||||||  |||||  ||| |||||||||||||| ||||| ||||||||| | ||| ||||||||||||||||| ||||||    
T  12223824 gagaaaatggtcactttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgcagttccgt 12223725  T
Q  496 tatcactttag 506  Q
    ||| |||||||    
T  12223724 tattactttag 12223714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 46286505 - 46286610
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||||| ||| || ||| |||| | | |||||| ||||| ||||||||| ||||||||||| ||||||||||||||| ||||||    
T  46286505 aaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgttatc 46286604  T
Q  500 acttta 505  Q
    ||||||    
T  46286605 acttta 46286610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 506
Target Start/End: Complemental strand, 8375709 - 8375598
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    ||||| |||| |||| ||||||||||| |  ||| | ||||||||||||||||| ||||| | ||||||| ||||| ||||  |||||||||||||||||    
T  8375709 agagataatagtcacattagtccctgacttcgcaccgcactgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccg 8375610  T
Q  495 ttatcactttag 506  Q
    |||||| |||||    
T  8375609 ttatcaatttag 8375598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 48788793 - 48788687
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||  ||| ||| | |||| ||| ||||||||||||||| ||||| |  |||||| | ||||||||| ||||||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatc 48788694  T
Q  500 actttag 506  Q
    |||||||    
T  48788693 actttag 48788687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 42477383 - 42477487
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||||||| ||| |||| ||| |||||| |||  |||| ||||||||  ||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  42477383 aaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagt-cctgactctgcacttccgttatc 42477481  T
Q  500 acttta 505  Q
    | ||||    
T  42477482 atttta 42477487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 506
Target Start/End: Original strand, 8374926 - 8375022
Alignment:
Q  410 tttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||||||| |||||| ||| ||||||||||||||  ||||| || |||||| ||||| ||||  |||| | ||||||||||||||||||||||    
T  8374926 tttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcactttag 8375022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 517
Target Start/End: Complemental strand, 13578391 - 13578325
Alignment:
Q  450 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 517  Q
    ||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  13578391 tgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttag-tcctgacgtt 13578325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 542
Target Start/End: Complemental strand, 45584566 - 45584475
Alignment:
Q  451 gacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||| ||||||||| ||||||||| |  ||||||||||||||||||||||||||||  |||||||||       ||||||||||||||||||    
T  45584566 gactcaggattaaatacaaataagccaatgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 506
Target Start/End: Original strand, 39708111 - 39708211
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    ||||||||||| |||| |||| | ||| | |||||| |||||||||||| | |||| || ||||| ||||| | |||| |||||||||||||||||||||    
T  39708111 tcactttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgttatcacttta 39708210  T
Q  506 g 506  Q
    |    
T  39708211 g 39708211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 506
Target Start/End: Complemental strand, 44530681 - 44530626
Alignment:
Q  451 gacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||    
T  44530681 gactcaggattaaatataaataagtctctgactctgcacttccgttatcactttag 44530626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 505
Target Start/End: Complemental strand, 8048905 - 8048800
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||  | |||| |||||| ||| ||| |||| |||||  ||||| | ||||||| ||||| ||||| | ||||||||||||||||||||    
T  8048905 aaatagtcactttaccctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgttatc 8048806  T
Q  500 acttta 505  Q
    ||||||    
T  8048805 acttta 8048800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 456 - 517
Target Start/End: Complemental strand, 33607688 - 33607627
Alignment:
Q  456 aggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 517  Q
    ||||||||| ||||| ||||| |||| |||||||||||||||||| |||||| |||||||||    
T  33607688 aggattaaatacaaagaagtctctgattctgcacttccgttatcattttagaccctgacgtt 33607627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 498
Target Start/End: Original strand, 21062815 - 21062917
Alignment:
Q  396 gagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgt 495  Q
    ||||||||  |||||||||||||||| | |||| ||| |||||| | |||||| ||||| ||||||||| ||| | ||||||  | |||||||| |||||    
T  21062815 gagaaaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaatacatagaagtcctcggctctgcacctccgt 21062914  T
Q  496 tat 498  Q
    |||    
T  21062915 tat 21062917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 517
Target Start/End: Original strand, 44529068 - 44529147
Alignment:
Q  438 cacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 517  Q
    ||||||| ||| ||||| | ||||||| ||||||||||| | |||||  |||||| |||||||||||||  |||||||||    
T  44529068 cacatagatccctgactcatgattaaatacaaataagtctccgactcaacacttctgttatcactttagtccctgacgtt 44529147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 506
Target Start/End: Original strand, 32793225 - 32793279
Alignment:
Q  452 acttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||||||||| |||||||||||  ||| |||||| ||| |||||||||||||    
T  32793225 acttaggattaaatacaaataagtcattgattctgcatttcggttatcactttag 32793279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 19434049 - 19433949
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||||||||| | ||| || |||  ||||||| |||||  ||| ||||||||||| | ||  ||||| | ||||| ||||||| ||||||||||||    
T  19434049 tcactttagtccctaactctccatctcgttgtcacaaaggtctctgatttaggattaaatataaggaagtcaccgactccgcacttcagttatcacttta 19433950  T
Q  506 g 506  Q
    |    
T  19433949 g 19433949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 393 - 542
Target Start/End: Complemental strand, 17330358 - 17330209
Alignment:
Q  393 gaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttc 492  Q
    |||||| ||||| || ||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||| |||    
T  17330358 gaagagcaaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttc 17330259  T
Q  493 cgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    ||||||||||||||  | |||||||       ||||||||||||||||||    
T  17330258 cgttatcactttagtccatgacgttaagttattctgttaagtgatgatgt 17330209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 31091648 - 31091542
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| |||||||| |||||| ||  ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 31091549  T
Q  500 actttag 506  Q
    |||||||    
T  31091548 actttag 31091542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 32766360 - 32766254
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| |||||||| |||||| |||  |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  32766360 aaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 32766261  T
Q  500 actttag 506  Q
    |||||||    
T  32766260 actttag 32766254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 517
Target Start/End: Original strand, 31090166 - 31090283
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||| ||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||| |||||||||||||||||||||     
T  31090166 aaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttatg 31090265  T
Q  500 actttagatcctgacgtt 517  Q
    | |||||  |||||||||    
T  31090266 attttagtccctgacgtt 31090283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 32764940 - 32765045
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||||||||||||||| ||   ||||| |||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  32764940 aaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 32765039  T
Q  500 acttta 505  Q
    ||||||    
T  32765040 acttta 32765045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 2910102 - 2910244
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    |||||||||||||||||  ||||| |||| ||| ||||||||||| ||| |||||  |||||||| ||||||||||| |||||||||||||||| || ||    
T  2910102 aaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtc 2910201  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  2910202 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 2910244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 7073641 - 7073783
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||| | |||||||| || |||||| ||||||||  ||| |  |||||||| ||||||||||| |||| |||||||||||||||||    
T  7073641 aaatagtcactttagtccttcattctgcagcttactgtcgcataggtctctgattcgggattaaatacaaataagtctctgattctgcacttccgttatc 7073740  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  7073741 actttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 440 - 517
Target Start/End: Original strand, 14704048 - 14704125
Alignment:
Q  440 cataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 517  Q
    ||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagtccctgacgtt 14704125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 24459561 - 24459461
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    ||||||| |||||||| |||||| ||| ||||||||||||||| ||| | ||||||||| ||||||||||| ||||| |||||||||  |||||||||||    
T  24459561 tcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcacttta 24459462  T
Q  506 g 506  Q
    |    
T  24459461 g 24459461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 24458062 - 24458168
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||||||| |||| ||| || |||||||||||| ||||| |  |||||| ||||||||||  |||||||| ||||| |||||||    
T  24458062 aaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactctacactttcgttatc 24458161  T
Q  500 actttag 506  Q
    |||||||    
T  24458162 actttag 24458168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 401 - 506
Target Start/End: Complemental strand, 34037793 - 34037688
Alignment:
Q  401 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 500  Q
    |||| |||||||||||| ||| |||||| ||  |||||| | |||||||| ||| ||||||||| |||||||||||  |||||||||||||| |||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatca 34037694  T
Q  501 ctttag 506  Q
    ||||||    
T  34037693 ctttag 34037688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 406 - 540
Target Start/End: Complemental strand, 40000449 - 40000315
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    ||||||| |||||||| |||||| ||| |||| |||||| ||| ||| | ||||||||| ||||||||||| || || ||||||||||||||||||||||    
T  40000449 tcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatcacttta 40000350  T
Q  506 gatcctgacgttnnnnnnntctgttaagtgatgat 540  Q
       |||||||||       ||||||||||||||||    
T  40000349 ttccctgacgttaagaaaatctgttaagtgatgat 40000315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 39015007 - 39015113
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||||||||||| |||||||| |||||| ||| ||| ||||||| ||| ||||| ||||||||| ||||||| |||  ||||||||||||| | |||||    
T  39015007 aaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgcactttcattatc 39015106  T
Q  500 actttag 506  Q
    | |||||    
T  39015107 attttag 39015113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 423 - 506
Target Start/End: Complemental strand, 17466926 - 17466843
Alignment:
Q  423 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||| ||| |||||||||| | |  ||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  17466926 tctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttag 17466843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 2911612 - 2911506
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| ||| ||| ||||||| ||| |||||||||| | |||||||| |   ||||| | ||||||||| |||||| |||||||||||||||    
T  2911612 aaatagtcactttggtctctggttctgcagctcgctgtcacataaggccatgactcaaagttaaatataaataagtctctgactttgcacttccgttatc 2911513  T
Q  500 actttag 506  Q
    |||||||    
T  2911512 actttag 2911506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 501
Target Start/End: Complemental strand, 5915113 - 5915012
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||| ||| |||||| ||| || ||| |||||||  ||||| || |||||| ||||| ||||| || |||||||||||||||||||    
T  5915113 aaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccgttatc 5915014  T
Q  500 ac 501  Q
    ||    
T  5915013 ac 5915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 39016502 - 39016398
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccat--gacttaggattaaacacaaataagtccctgactctgcacttccgtta 497  Q
    ||||| ||||||||||| ||||||||||| ||| ||||||||||  ||  |  |||| ||||||||| |||||||||||    |||||||||||||||||    
T  39016502 aaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc----actctgcacttccgtta 39016407  T
Q  498 tcactttag 506  Q
    |||||||||    
T  39016406 tcactttag 39016398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 517
Target Start/End: Complemental strand, 34582785 - 34582674
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||| ||||||||||| |||||| ||  |||| ||| |||||  |||||  |||||||| |||||  ||||||||| | |||||||||||||||||||||    
T  34582785 tcacgttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttta 34582686  T
Q  506 gatcctgacgtt 517  Q
    |  |||||||||    
T  34582685 gtccctgacgtt 34582674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 506
Target Start/End: Complemental strand, 38985103 - 38985004
Alignment:
Q  407 cactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||| |||| | | |||| |||||||||||| || |  ||||||  | |||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  38985103 cactttagcccctaactttgcacctcactgtcacaaagatttatgactcggaattaaatacaaagaagtccttgactctgcacttccgttatcactttag 38985004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 21733834 - 21733786
Alignment:
Q  458 gattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  21733834 gattaaatacaaataagtctctgactctgcacttccgtcatcactttag 21733786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 516
Target Start/End: Original strand, 17466084 - 17466159
Alignment:
Q  441 ataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgt 516  Q
    |||||| | ||||| ||||||||| ||||| |  || ||||||||||||||||||| |||||||||  ||||||||    
T  17466084 ataggttcttgactcaggattaaatacaaagatatctctgactctgcacttccgttttcactttagtccctgacgt 17466159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 506
Target Start/End: Original strand, 38853763 - 38853863
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    ||||||| |||||||| ||| ||  ||| ||||| | |||||  ||||| ||||||||| |||||  ||||||| | | |||||||||||||||| ||||    
T  38853763 tcactttggtccctgactctacacttcattgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaattta 38853862  T
Q  506 g 506  Q
    |    
T  38853863 g 38853863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 517
Target Start/End: Complemental strand, 17702040 - 17701923
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||| ||||||||||| ||| |||||| |||||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  17702040 aaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 17701941  T
Q  500 actttagatcctgacgtt 517  Q
    |||||||  |||||||||    
T  17701940 actttagtccctgacgtt 17701923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 2592128 - 2592022
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||| |||||||| ||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||   ||||||||||||    
T  2592128 aaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgttatc 2592029  T
Q  500 actttag 506  Q
    |||||||    
T  2592028 actttag 2592022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 395 - 517
Target Start/End: Original strand, 17700515 - 17700637
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| |||||||||||  ||| |||||| |||  |||||||||||| | ||||| ||||||||| |||||||||||||||||||||||||||||    
T  17700515 agagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccg 17700614  T
Q  495 ttatcactttagatcctgacgtt 517  Q
    ||||||||||||  |||||||||    
T  17700615 ttatcactttagtccctgacgtt 17700637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 517
Target Start/End: Original strand, 55388075 - 55388192
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||||||||||||||| ||| |||||| |||||||  ||||| ||||||||| ||||||||||  ||||||||||||| ||||||||    
T  55388075 aaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccgttatc 55388174  T
Q  500 actttagatcctgacgtt 517  Q
    |||||||  |||||||||    
T  55388175 actttagtccctgacgtt 55388192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 400 - 540
Target Start/End: Original strand, 2591629 - 2591769
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||||||||||||||| ||  ||||||||||||||| ||||| ||||||||| ||||| ||||| |||||||||||||||| | |||    
T  2591629 aaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccatgatc 2591728  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgat 540  Q
    |||||||  ||||| |||       ||||||||||||||||    
T  2591729 actttagtccctgatgttaagttattctgttaagtgatgat 2591769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 517
Target Start/End: Original strand, 36278954 - 36279071
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||||||| | || |||  |||||||||||||| ||| | ||||||||| ||||||||||| ||||||||||||||||||||||    
T  36278954 aaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatc 36279053  T
Q  500 actttagatcctgacgtt 517  Q
    | |||||  |||||||||    
T  36279054 attttagtccctgacgtt 36279071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 48572987 - 48573093
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| |||||||| |||||| |||  | |||||||||||| ||||| ||||||||| ||||||||| | ||||||||||||||||||||||    
T  48572987 aaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatc 48573086  T
Q  500 actttag 506  Q
    |||||||    
T  48573087 actttag 48573093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 541
Target Start/End: Complemental strand, 52318438 - 52318297
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| ||| |||| ||||||  || ||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||| | |||     
T  52318438 aaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctgatatt 52318339  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatg 541  Q
    |||||||  |||||||||       |||||||||||||||||    
T  52318338 actttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 542
Target Start/End: Original strand, 52316976 - 52317123
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||| |||||||  ||||| | ||||||| |||||||||||  | ||||||||| ||||    
T  52316976 agagcaaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccg 52317075  T
Q  495 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||| |||||  | |||||||       ||||||||||||||||||    
T  52317076 ttatcattttagtccatgacgttaaaaaaatctgttaagtgatgatgt 52317123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 11773143 - 11773066
Alignment:
Q  429 actcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||| ||||||||||||||| ||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  11773143 actcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttag 11773066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 48808366 - 48808474
Alignment:
Q  400 aaataatcacttta--gtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgtta 497  Q
    ||||||||||||||  ||||||||||||||| ||| |||| | |||||||  ||||| ||||||||| |||||||||| ||| ||||||||||||||||     
T  48808366 aaataatcactttatagtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagttcctaactctgcacttccgttg 48808465  T
Q  498 tcactttag 506  Q
    |||||||||    
T  48808466 tcactttag 48808474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 45601053 - 45600954
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||||||||||| ||||   ||| ||||||||||||||| ||| | ||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  45601053 tcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagt-cctgactctgcacttccgttatcacttta 45600955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 34263802 - 34263912
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| ||||||| | |||||| |||||| ||| |||||||| |||||| ||| | ||||||||| ||||||||||| |||||||| |||||||     
T  34263802 agagcaaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttcca 34263901  T
Q  495 ttatcacttta 505  Q
    |||||||||||    
T  34263902 ttatcacttta 34263912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 55389590 - 55389484
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||| |||||| | |||||| ||| ||||||||||||||  ||||| |  |||||| |||| ||||||||||||||| |||||||||||||    
T  55389590 aaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttccgttatc 55389491  T
Q  500 actttag 506  Q
    |||||||    
T  55389490 actttag 55389484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 33428550 - 33428450
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    ||||||| |||||||| |||||| |||  |||||||||||||| ||||| || |||||| ||||| |||||| |||||||||| ||||||| ||||||||    
T  33428550 tcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgtcacttta 33428451  T
Q  506 g 506  Q
    |    
T  33428450 g 33428450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 437 - 517
Target Start/End: Complemental strand, 36280401 - 36280321
Alignment:
Q  437 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgtt 517  Q
    |||||||||||  ||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||  |||||||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagtccctgacgtt 36280321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 48574538 - 48574474
Alignment:
Q  442 taggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  48574538 taggtccctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttag 48574474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 506
Target Start/End: Original strand, 20464078 - 20464177
Alignment:
Q  407 cactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||||||| || |||||| |||  ||||||| |||||| || || | ||||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  20464078 cactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcactttag 20464177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 406 - 517
Target Start/End: Complemental strand, 47118166 - 47118055
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||||||||||| |||||| |||  ||||| ||| ||||  |||| |||||||||  |||| ||||| |||||||||||||| |||||||||||||    
T  47118166 tcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgttatcacttta 47118067  T
Q  506 gatcctgacgtt 517  Q
    |  |||||||||    
T  47118066 gtccctgacgtt 47118055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 19114535 - 19114641
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    |||| ||||||||||||||||| ||||||  ||  ||||||| |||||| ||||| | ||||||| ||||| ||||| || ||| |||||||||||||||    
T  19114535 aaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatc 19114634  T
Q  500 actttag 506  Q
    |||||||    
T  19114635 actttag 19114641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 506
Target Start/End: Complemental strand, 53959187 - 53959115
Alignment:
Q  434 ctgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||||||||||  ||||| | ||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttag 53959115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 493
Target Start/End: Original strand, 53957672 - 53957769
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 493  Q
    |||| ||||| |||||||||| | |||||||||||||| |||| |||||||| | ||||| |||| |||| |||||||||||  |||||||||||||||    
T  53957672 agagcaaatagtcactttagtacttgattctgcaactcgctgttacataggttcctgactcagga-taaatacaaataagtctatgactctgcacttcc 53957769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 47075466 - 47075366
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||| ||| ||| |||||| |||  |||||||||||||| | ||| | ||||||| ||||| ||  |||||||||| |||||||||||||||||||    
T  47075466 tcactttaatccttgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaagaaacccctgactctacacttccgttatcacttta 47075367  T
Q  506 g 506  Q
    |    
T  47075366 g 47075366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 542
Target Start/End: Original strand, 50753820 - 50753961
Alignment:
Q  401 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 500  Q
    |||| ||||||||||||||   |||||| ||| ||||||||||||||| | | | ||||||||| | ||| ||||  |||||||| |||||| |||||||    
T  50753820 aatagtcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctgactctacacttctgttatca 50753919  T
Q  501 ctttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    ||||||  |||| ||||       ||||||||||||||||||    
T  50753920 ctttagtccctgccgttaaaaaaatctgttaagtgatgatgt 50753961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 19115267 - 19115162
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||| | ||| |||||| |||  |||||||||||||| | ||| ||||||||| ||||| |||| | |||||||||||||||||| |     
T  19115267 aaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagt-catgactctgcacttccgttttt 19115169  T
Q  500 actttag 506  Q
    |||||||    
T  19115168 actttag 19115162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 19331110 - 19331183
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataa 473  Q
    |||||| |||||| || ||||| |||||| ||  ||||||||||||||| ||||| ||||||||| ||||||||    
T  19331110 aaataaccactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 506
Target Start/End: Original strand, 33427791 - 33427859
Alignment:
Q  437 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||||||| ||| | ||||||||| |||||| |  |||||||||||||||| ||||||||||||||    
T  33427791 tcacataggtccttgattcaggattaaatacaaattaa-ccctgactctgcactttcgttatcactttag 33427859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 497
Target Start/End: Original strand, 47427882 - 47427959
Alignment:
Q  420 gattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgtta 497  Q
    |||| |||| ||| ||||||||||||||| ||||| |  |||||| ||||| |||||||||||| ||||||| |||||    
T  47427882 gattgtgcacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgactgtgcacttacgtta 47427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 49261620 - 49261552
Alignment:
Q  435 tgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||||||||| ||||| ||||||||| |||   ||||| || |||||||| |||||||||||||||||    
T  49261620 tgtcacataggtccctgactcaggattaaataca---aagtctctaactctgcatttccgttatcactttag 49261552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 505
Target Start/End: Original strand, 3671077 - 3671145
Alignment:
Q  437 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    ||||| |||||  ||||| || |||||| |||||||||||  ||||||| |||||||||||||||||||    
T  3671077 tcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccacttccgttatcacttta 3671145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 506
Target Start/End: Complemental strand, 48809697 - 48809669
Alignment:
Q  478 ctgactctgcacttccgttatcactttag 506  Q
    |||||||||||||||||||||||||||||    
T  48809697 ctgactctgcacttccgttatcactttag 48809669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 394 - 542
Target Start/End: Complemental strand, 32665897 - 32665749
Alignment:
Q  394 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 493  Q
    ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||  ||||| | ||||||| |||||||||||  |||||||||||||||    
T  32665897 aagagcaaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttcc 32665798  T
Q  494 gttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||||||||  |||| ||||       ||||||||||||||||||    
T  32665797 gttatcactttagtccctggcgttacaaaaatctgttaagtgatgatgt 32665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 9339648 - 9339790
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| || |||||||||||||||||||| |||  ||| |||||||||| ||||| ||||||||| |||||||| |||| ||||||||||||||||||||    
T  9339648 aaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgttatc 9339747  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||||  |||||||||       ||||||||||||||||||    
T  9339748 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 517
Target Start/End: Complemental strand, 7945675 - 7945558
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||||||| ||| |||||||| |||||| ||| ||||||||||||| | ||||| ||||||||| ||||||||||| |||||| |||||||||||||||    
T  7945675 aaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatc 7945576  T
Q  500 actttagatcctgacgtt 517  Q
    |||||||  |||||||||    
T  7945575 actttagtccctgacgtt 7945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 395 - 540
Target Start/End: Original strand, 10332983 - 10333128
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| |||||||||||||||| | |||| |||  |||||||||||||| ||| | ||||||||| | |||||||||||| ||||||||||||||    
T  10332983 agagcaaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccg 10333082  T
Q  495 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgat 540  Q
    |||||| |||||  | |||||||       ||||||||||||||||    
T  10333083 ttatcattttagtccttgacgttaaaaaaatctgttaagtgatgat 10333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 506
Target Start/End: Original strand, 7944169 - 7944263
Alignment:
Q  412 tagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||||||| |||||||| ||||||||||||||| ||||| |  |||||| |||||||||||| ||||||||||||| |||||||| |||||    
T  7944169 tagtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatcaatttag 7944263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 10333307 - 10333201
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||| || || ||||||||||| ||| |||| |||||||||  ||||| | ||||||| ||||||||||| ||||||||||||||||||||||    
T  10333307 aaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttccgttatc 10333208  T
Q  500 actttag 506  Q
    |||||||    
T  10333207 actttag 10333201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 9341125 - 9341040
Alignment:
Q  421 attctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||||||| |||||| |||||||||||| ||||| ||||||||| ||||||||||| |||||| |||||||| |||||||||||||    
T  9341125 attctgcatctcactatcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgttatcactttag 9341040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 395 - 542
Target Start/End: Original strand, 52439476 - 52439619
Alignment:
Q  395 agagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccg 494  Q
    |||| ||||| ||||||||| ||||||||||||| ||| ||||||||||||||  || || ||||||||| ||| |||||||     ||||||| |||||    
T  52439476 agagcaaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtc----tctctgcatttccg 52439571  T
Q  495 ttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    ||||||||||||  |||||||||       ||||||||||||||||||    
T  52439572 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 52439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 52440680 - 52440574
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    |||||||||| || ||| |||| | ||||  || ||||||||||||||| ||| | ||||||||| | ||||||||| |||||||||||||||| |||||    
T  52440680 aaataatcacattggtctctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatc 52440581  T
Q  500 actttag 506  Q
    |||||||    
T  52440580 actttag 52440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 393 - 506
Target Start/End: Original strand, 5782409 - 5782522
Alignment:
Q  393 gaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttc 492  Q
    |||||| ||||  ||| |||||||||||| |||||| ||| ||||||||||||||  ||||| | ||||||| ||||| ||||| |||| | ||||||||    
T  5782409 gaagagcaaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttc 5782508  T
Q  493 cgttatcactttag 506  Q
    | ||||||||||||    
T  5782509 ccttatcactttag 5782522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 5783205 - 5783124
Alignment:
Q  425 tgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||| ||| ||||||||||| |||  |||| || |||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  5783205 tgcacctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcactttag 5783124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 6612421 - 6612526
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||||||| |||||| ||| |||| | | | |||  ||||| | ||||||| ||||| ||||| |||||||||||||||| |||||    
T  6612421 aaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatc 6612520  T
Q  500 acttta 505  Q
    ||||||    
T  6612521 acttta 6612526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 6614050 - 6613994
Alignment:
Q  450 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||| ||||||| |||||    
T  6614050 tgactcaggattaaatacaaataagtctctgactctgcacttcagttatcattttag 6613994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 506
Target Start/End: Original strand, 22856732 - 22856788
Alignment:
Q  450 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||| ||||||||| ||||| ||||| || ||||||||||||||||||||||||||    
T  22856732 tgactcaggattaaatacaaagaagtctctaactctgcacttccgttatcactttag 22856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 534655 - 534574
Alignment:
Q  423 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||| ||| |||| |||||||| | ||| | ||||||||| ||||| |||||| ||||||| |||||| ||||||||||||    
T  534655 tctgcacctcgctgttacataggttcttgattcaggattaaatacaaacaagtcc-tgactctacacttctgttatcacttta 534574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 506
Target Start/End: Original strand, 3117688 - 3117757
Alignment:
Q  437 tcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||| |||||  ||||| | ||||||| ||||| || || |||||||| ||||||||||||||||||||    
T  3117688 tcacaaaggtctctgactcaagattaaatacaaagaaatctctgactctccacttccgttatcactttag 3117757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 11060880 - 11060799
Alignment:
Q  425 tgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||| ||| |||||||| |||||||||||| |  |||||| |||||  ||||||||| |  |||||| ||||||||||||||    
T  11060880 tgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgttatcactttag 11060799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 506
Target Start/End: Original strand, 25037925 - 25037986
Alignment:
Q  445 gtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||| ||||| | ||||||| ||||| ||||| ||||||||| |||| ||||||||||||||    
T  25037925 gtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttag 25037986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 506
Target Start/End: Original strand, 25043137 - 25043198
Alignment:
Q  445 gtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||| ||||| | ||||||| ||||| ||||| ||||||||| |||| ||||||||||||||    
T  25043137 gtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttag 25043198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 500
Target Start/End: Original strand, 44019996 - 44020088
Alignment:
Q  408 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 500  Q
    ||||| |||||||| | ||||||||  ||||||| | |||  ||||| | ||||||| | ||| ||||| |||||||||||||| ||||||||    
T  44019996 actttggtccctgactttgcaactcgttgtcacaaaagtctctgactcaagattaaatataaagaagtctctgactctgcacttacgttatca 44020088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 116057 - 116163
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||| ||| |||||||| ||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  116057 aaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatc 116156  T
Q  500 actttag 506  Q
    |||||||    
T  116157 actttag 116163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 30748001 - 30748107
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||| ||||| |||||||| ||||| |||||||    
T  30748001 aaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgttatc 30748100  T
Q  500 actttag 506  Q
    |||||||    
T  30748101 actttag 30748107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 406 - 505
Target Start/End: Original strand, 31218963 - 31219062
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||| || |||| |||||| ||| ||||||||||||||| | ||| ||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  31218963 tcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgttatcacttta 31219062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 31219275 - 31219175
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||| ||||||| |||||| ||| ||||||||||||||  | ||| ||||||||| ||||| |||| ||||||||  |||||||||||||||||||    
T  31219275 tcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatcacttta 31219176  T
Q  506 g 506  Q
    |    
T  31219175 g 31219175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 506
Target Start/End: Original strand, 23507945 - 23508056
Alignment:
Q  394 aagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttcc 493  Q
    ||||| ||||| ||||||||||| ||| | || || ||| ||||||||||||| | ||| | ||||||||| ||||| || ||  ||||| | |||||||    
T  23507945 aagagcaaatagtcactttagtctctgct-ctacacctccctgtcacataggttcctgattcaggattaaatacaaacaaatctatgactttacacttcc 23508043  T
Q  494 gttatcactttag 506  Q
     ||||||||||||    
T  23508044 tttatcactttag 23508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 42278051 - 42278193
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||||||| |||||||||| ||  ||||||||||||||| |||||  |||||||| |||||||||| |||||||||||||||||||||||    
T  42278051 aaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatc 42278150  T
Q  500 actttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    ||||||   |||||||||       ||||||||||||||||||    
T  42278151 actttaatccctgacgttaaaaaaatctgttaagtgatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 47874566 - 47874672
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||||||||||| ||||||||||| ||| || |||||||||||| ||||| | ||||||| |||||||||||||||| |||||||||||||||||    
T  47874566 aaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatc 47874665  T
Q  500 actttag 506  Q
    |||||||    
T  47874666 actttag 47874672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 53771164 - 53771064
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||||||||||| |||||| |||  |||||||||||||| ||||| || |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  53771164 tcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttatcacttta 53771065  T
Q  506 g 506  Q
    |    
T  53771064 g 53771064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 47878605 - 47878499
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| |||||||  ||||||| |||||| ||| |||| |||||||||| |||||  |||||||| |||||||||||||||||||| |||||||||||||    
T  47878605 aaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatc 47878506  T
Q  500 actttag 506  Q
    |||||||    
T  47878505 actttag 47878499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 391 - 504
Target Start/End: Original strand, 31844715 - 31844828
Alignment:
Q  391 ttgaagagaaaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcact 490  Q
    |||||||| ||||| ||||||||||||||   |||||| ||| ||||||||||||||| ||||| ||||||||| ||||| |||||||| ||||| ||||    
T  31844715 ttgaagagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacact 31844814  T
Q  491 tccgttatcacttt 504  Q
    ||| ||||||||||    
T  31844815 tcccttatcacttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 401 - 506
Target Start/End: Complemental strand, 26173062 - 26172957
Alignment:
Q  401 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 500  Q
    |||| |||||||||||||  | | |||| || ||||||| | |||||| ||||| | ||||||| ||||||||||| |||||||||||||||||||||||    
T  26173062 aatagtcactttagtccccaactatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctgactctgcacttccgttatca 26172963  T
Q  501 ctttag 506  Q
    ||||||    
T  26172962 ctttag 26172957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 505
Target Start/End: Original strand, 54574450 - 54574532
Alignment:
Q  423 tctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||| ||| ||||||||||||||  ||||| ||||||||| |||||||||| | | |||||||||||||||||||||||||    
T  54574450 tctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatcacttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 540
Target Start/End: Original strand, 4701801 - 4701907
Alignment:
Q  434 ctgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgttnnnnnnntctgttaag 533  Q
    |||||||| ||||| |||||||| ||||||| ||||| ||||||| |||| |||||||||| |||||||||||  ||||| |||       |||||||||    
T  4701801 ctgtcacaaaggtctatgacttatgattaaatacaaagaagtccccgactatgcacttccgctatcactttagtccctgatgttaaataattctgttaag 4701900  T
Q  534 tgatgat 540  Q
    |||||||    
T  4701901 tgatgat 4701907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 517
Target Start/End: Complemental strand, 48740135 - 48740024
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    |||||||||||| ||  |||||| |||| |||||| ||| ||| ||||| |  |||||| ||||| |||||||  |||||||||||| ||||||||||||    
T  48740135 tcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgttatcacttta 48740036  T
Q  506 gatcctgacgtt 517  Q
    |  |||||||||    
T  48740035 gtccctgacgtt 48740024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 4703332 - 4703232
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttta 505  Q
    ||||||||||  |||| ||| || ||| ||||||||||||||| | ||| || |||||| ||||| |||||  ||||| | |||||||||||||||||||    
T  4703332 tcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcacttta 4703233  T
Q  506 g 506  Q
    |    
T  4703232 g 4703232  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 506
Target Start/End: Original strand, 26170692 - 26170748
Alignment:
Q  450 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||| ||||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  26170692 tgacttaagattaaatacaaataagttccttactctgcacttccattatcactttag 26170748  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 502
Target Start/End: Original strand, 53770341 - 53770437
Alignment:
Q  406 tcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcact 502  Q
    ||||||||||| |||| |||||| ||| |  |||||||||| | ||||| || |||||| ||||| |||||  ||||||||||||||| ||||||||    
T  53770341 tcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccattatcact 53770437  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 506
Target Start/End: Original strand, 39868932 - 39869028
Alignment:
Q  408 actttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||||| |||| |||||| ||| |||| ||| |||||| ||||| |  |||||| ||||| |||| |  |||||||||||||||||||||||||||    
T  39868932 actttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagttc--gactctgcacttccgttatcactttag 39869028  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 503
Target Start/End: Complemental strand, 39870795 - 39870692
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    |||| ||||||||| || |||| |||||| ||| |||||||||| || | ||| | | ||||||||||| | || || ||||||||||||||||| ||||    
T  39870795 aaatgatcactttaatctctgactctgcacctcgctgtcacataagttcctgagtcaagattaaacacagagaaatcactgactctgcacttccgatatc 39870696  T
Q  500 actt 503  Q
    ||||    
T  39870695 actt 39870692  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 479
Target Start/End: Complemental strand, 42392009 - 42391930
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccct 479  Q
    |||| |||||||||||| |||| || ||| ||||||||||||||||||  ||||| | ||||||| |||||| |||||||    
T  42392009 aaatgatcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtccct 42391930  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 506
Target Start/End: Original strand, 2786253 - 2786329
Alignment:
Q  430 ctcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    |||| ||||||| |||| ||||||| ||||||||| |||||| | ||| ||| | |||||||||||||||| |||||    
T  2786253 ctcagtgtcacaaaggttcatgactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttag 2786329  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 19050298 - 19050346
Alignment:
Q  458 gattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||||| ||||| ||||| | |||||||||||||||||||||||||||    
T  19050298 gattaaatacaaagaagtctcggactctgcacttccgttatcactttag 19050346  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 504
Target Start/End: Complemental strand, 54574881 - 54574822
Alignment:
Q  445 gtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatcacttt 504  Q
    |||| ||||| ||||||||| |||||||| || || |||||||||||| |||||||||||    
T  54574881 gtccttgactcaggattaaatacaaataaatctctaactctgcacttctgttatcacttt 54574822  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 50694810 - 50694893
Alignment:
Q  459 attaaacacaaataagtccctgactctgcacttccgttatcactttagatcctgacgttnnnnnnntctgttaagtgatgatgt 542  Q
    |||||| | ||||||||  |||| ||||||||||||||||| ||||||  |||||||||       ||||||||||||||||||    
T  50694810 attaaatataaataagtttctgattctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatgt 50694893  T

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Target: scaffold0039 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 74433 - 74331
Alignment:
Q  401 aataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatca 500  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||| | ||| | ||||||| ||||| |||||| ||||||| ||| || | |||||    
T  74433 aatagtcagtttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtccttgactctacacctctgatatca 74334  T
Q  501 ctt 503  Q
    |||    
T  74333 ctt 74331  T

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Target: scaffold0039; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 79075 - 79181
Alignment:
Q  400 aaataatcactttagtccctgattctgcaactcactgtcacataggtccatgacttaggattaaacacaaataagtccctgactctgcacttccgttatc 499  Q
    ||||| ||| |||||| ||||| |||||| ||| ||||||||||||||| ||||| | ||||||| | ||| |||||| ||||| ||||| |||| ||||    
T  79075 aaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctccgatatc 79174  T
Q  500 actttag 506  Q
    |||||||    
T  79175 actttag 79181  T

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Target: scaffold0767 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 506
Target Start/End: Original strand, 5651 - 5707
Alignment:
Q  450 tgacttaggattaaacacaaataagtccctgactctgcacttccgttatcactttag 506  Q
    ||||| || |||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  5651 tgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttag 5707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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