View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_high_9 (Length: 532)
Name: NF15217_high_9
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32421856 - 32422076
Alignment:
| Q |
1 |
aaagtttatgttatgattaactttttggaattctaactatatggtgttaatggaatggaattccctaccgttaataggaactcgcattcacataatcatg |
100 |
Q |
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| T |
32421856 |
aaagtttatgttatgattaactttttggaattctaactatatggtgttaatggaatggaattccctaccgttaatagga-------------taatcatg |
32421942 |
T |
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| Q |
101 |
ttaacttaggacattcaatcttgattgaacagtttagaaaa-aatgtatatttaatttttcattttataatttagaatactaagattgaatctgaaccat |
199 |
Q |
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| T |
32421943 |
ttaacttggaacattcaatcttgattgaacaatttagaaaaaaatgtatatttagtttttcattttataatttagaatactaagattgaatctgaaccat |
32422042 |
T |
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| Q |
200 |
atctattaaagattagatgacacaactacctgaa |
233 |
Q |
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| T |
32422043 |
atctattaaagattagattacccaactacatgaa |
32422076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 334 - 517
Target Start/End: Original strand, 32422070 - 32422230
Alignment:
| Q |
334 |
acatgaaactg-tttttggtaagctaatggttttcttggtactttcgcagttttaattttaaaagacgagtgaataaaaaactttatggtacatgctaat |
432 |
Q |
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| T |
32422070 |
acatgaaactggtttttggtaagctaatggttttcttggtactttcgcagttttaattttaaaagac--------------ttttatagtacatgctaat |
32422155 |
T |
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| Q |
433 |
attctatgttattattttaaacaatgaaattaagttgaaattcatccaaccatttgacggtgggtaaatgaatataccgtggaat |
517 |
Q |
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| T |
32422156 |
attctatg---ttattttaaacaatgaaattaagttgaaattcatcgaaccattt-------ggtaaatgaatataccgtggaat |
32422230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 29776981 - 29777057
Alignment:
| Q |
116 |
caatcttgattgaacagtttagaaaaaatgtatatttaatttttcattttataatttagaatactaagattgaatctg |
193 |
Q |
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| T |
29776981 |
caatcttgatcaaacaatttagaaaatatacatattagattttt-attttataatttaaaatactaaggttgaatctg |
29777057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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