View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_11 (Length: 514)
Name: NF15217_low_11
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 498
Target Start/End: Original strand, 1452742 - 1453228
Alignment:
| Q |
13 |
ttctaatatgaatatcttgttcattcatttacttggaactaaaacttaaatttaggaatgtatcagttataccttgggatagttttatggtgcacaagtg |
112 |
Q |
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| T |
1452742 |
ttctaatatgaatatcttattcattcatttacttggaactaaaacttaaatttaggaatgtatcagttataccttgggatagttttatggtgcacaagtg |
1452841 |
T |
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| Q |
113 |
acattggtgttgcatcatgcacaagtttgtttctaccattgaattattaagttccagcgttagatcaagtgagatatatgggacttattgatccaatgat |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1452842 |
acattggtgttgcatcatgcacaattttgtttctaccattgaattattaagttccagcgttagatcaagtgagatatatgggacttattgatccaatgat |
1452941 |
T |
|
| Q |
213 |
ggaaaagaaatttgtgcatggtgcaacactcttctgtgcaccatagaattagcctatgactt--gtgaaatgtaatttccatttttgacaatttcacttt |
310 |
Q |
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| T |
1452942 |
ggaaaagaaatttgtgcatggtgcaacactcttctgtgcaccatagaattagcctatgacttgagtgaaatgtaatttccatttttgacaatttcacttt |
1453041 |
T |
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| Q |
311 |
gaatggtaaaattttgttatctacccttcttttttattcatttgatcgttatttattactctactttattcatcttgcgctccaaaataggcgtctcaac |
410 |
Q |
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| T |
1453042 |
gaatggtaaaa-tttgttatctacccttcttttttattcatttgatcgttatttattactctactttattcatcttgcgctccaaaataggcgtctcaac |
1453140 |
T |
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| Q |
411 |
aataacagcttgactggagtcattcccatttctttgacaaatgttactacgctgcaagttctgtgagtaatagtagaatcatagattt |
498 |
Q |
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| T |
1453141 |
aataacagcttgactggagtcattcccatttctttgacaaatgttactacgctgcaagttctgtgagtaatagtagaatcatagattt |
1453228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 362 - 478
Target Start/End: Original strand, 1446623 - 1446739
Alignment:
| Q |
362 |
tttattactctactttattcatcttgcgctccaaaataggcgtctcaacaataacagcttgactggagtcattcccatttctttgacaaatgttactacg |
461 |
Q |
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|||||||||||| |||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1446623 |
tttattactctattttatttatgttgctctccaaaataggcgtctcaataataacagcttgactggagtcattcccatttctttgacaaatgttactacg |
1446722 |
T |
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| Q |
462 |
ctgcaagttctgtgagt |
478 |
Q |
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||||||||||||||||| |
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| T |
1446723 |
ctgcaagttctgtgagt |
1446739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 1434203 - 1434305
Alignment:
| Q |
376 |
ttattcatcttgcgctccaaaataggcgtctcaacaataacagcttgactggagtcattcccatttctttgacaaatgttactacgctgcaagttctgtg |
475 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
1434203 |
ttattcatcttgctctccaaaataggcgtctcaacaataacagcttgactggagtcattcccatttctttgtcaaatgttgctacgctgcaagttctgtg |
1434302 |
T |
|
| Q |
476 |
agt |
478 |
Q |
| |
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||| |
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|
| T |
1434303 |
agt |
1434305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 246 - 478
Target Start/End: Original strand, 1439512 - 1439755
Alignment:
| Q |
246 |
ctgtgcaccatagaattagcctatgacttgtgaaatgtaatttccatttttgacaatttcactttgaatggtaaaattttgttatctacccttctttttt |
345 |
Q |
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|||||||||||||||||| |||||| |||| | | |||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||| |
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| T |
1439512 |
ctgtgcaccatagaatta-cctatgccttgacagagagaatttccatttttgacaatttcactttgcttagtaaaattttgttatctgccctt--ttttt |
1439608 |
T |
|
| Q |
346 |
attcatttgatc----gtta----------tttattactctactttattcatcttgcgctccaaaataggcgtctcaacaataacagcttgactggagtc |
431 |
Q |
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|| |||||||| |||| |||||||||||| ||||| || |||| || ||||||||||||||||| ||||||||||||||||||| | |
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| T |
1439609 |
atgcatttgataactagttacctatgaatatttattactctattttatgtatgttgctcttcaaaataggcgtctcaataataacagcttgactggaggc |
1439708 |
T |
|
| Q |
432 |
attcccatttctttgacaaatgttactacgctgcaagttctgtgagt |
478 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
1439709 |
attcccatttctttggcaaaggttactacgctgcaagttctgtgagt |
1439755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 1427365 - 1427467
Alignment:
| Q |
376 |
ttattcatcttgcgctccaaaataggcgtctcaacaataacagcttgactggagtcattcccatttctttgacaaatgttactacgctgcaagttctgtg |
475 |
Q |
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||||||||||||| |||||||| ||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||| || |||||||||||||||| |
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| T |
1427365 |
ttattcatcttgctctccaaaacaggcgtctcaataataacaccttgactggccacattcccatgtctttgacaaatgtttcttcgctgcaagttctgtg |
1427464 |
T |
|
| Q |
476 |
agt |
478 |
Q |
| |
|
||| |
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|
| T |
1427465 |
agt |
1427467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 1446533 - 1446576
Alignment:
| Q |
13 |
ttctaatatgaatatcttgttcattcatttacttggaactaaaa |
56 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
1446533 |
ttctaatatgattatcttattcattcatttacttggaactaaaa |
1446576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 1940442 - 1940512
Alignment:
| Q |
172 |
ttagatcaagtgagatata-tgggacttattgatccaatgatggaaaagaaatttgtgcatggtgcaacac |
241 |
Q |
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|||||||||||||||||| || |||||||||||||||||||| |||| ||| ||||| || ||||||||| |
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| T |
1940442 |
ttagatcaagtgagatatggtgagacttattgatccaatgatgaaaaacaaacttgtgtatagtgcaacac |
1940512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 38406497 - 38406436
Alignment:
| Q |
95 |
ttttatggtgcacaagtgacattggtgttgcatcatgcacaagtttgtttctaccattgaat |
156 |
Q |
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||||||||||||||||||| || ||| |||||| || |||||||| |||| ||| ||||||| |
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| T |
38406497 |
ttttatggtgcacaagtgagataggttttgcattatacacaagttcgtttttactattgaat |
38406436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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