View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_12 (Length: 507)
Name: NF15217_low_12
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 36 - 490
Target Start/End: Original strand, 2667960 - 2668413
Alignment:
| Q |
36 |
actatttaaatttggtaacattctaaaaatgttaggtaaaacctttctttttatcattaagaagtcaagttgatacataaacatcaaactgaagacctta |
135 |
Q |
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| T |
2667960 |
actatttgaatttggtaacattctaaaaatgttaggtaaaacctctctttttgtctttaagaaatcaagttgatatatgagcatcgaattggagatcttg |
2668059 |
T |
|
| Q |
136 |
aaaagagcacattctaatattttaagtcatagtaaagtctatgttactctaaaatgacatagttaacatctaagaaactaactatagcaatcaaaacaat |
235 |
Q |
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| T |
2668060 |
aaaggagcacactctaatattttaagtcatggtaaagtctatgttactatacaataacgtggttaacatctaagaaacttactatagcaatcaaaacgat |
2668159 |
T |
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| Q |
236 |
gatagtgactaattggctatggaatattttcctagctaattttaagtaatgt-nnnnnnntataaattgatggacacagagtaattaagaagctcgttgt |
334 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
2668160 |
gatagtgactaattggctgtggaatattttcctagctaattttaagtaatgtaaaaaaaatataaattgatggacac--agtaattaagaagctcgttgt |
2668257 |
T |
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| Q |
335 |
ttatttagttagtggatttcagaaagaacagtgtctctcactcagttgttccagcatcgtcttatctttcatcgattgagggtttcatcgtctaaaattc |
434 |
Q |
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|||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |
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| T |
2668258 |
ttatttagttagtgaattctagaaagaacaatgtctctcactcagttgttccagcatcgccttacctttcatcgattgaaggtttcatcgtctaaaattc |
2668357 |
T |
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| Q |
435 |
aatggcttatcagtcgatgtcggataacgtgatatttatttataggtgtaatggac |
490 |
Q |
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| T |
2668358 |
aatggcctatcagtcgatgtcggataacgtgatatttatttatagttgtaatggac |
2668413 |
T |
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