View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_13 (Length: 504)
Name: NF15217_low_13
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_13 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 29199437 - 29199044
Alignment:
| Q |
1 |
aaaatgcttaaaaattaaaattgacttattttcacatagcaattcaagaatatgttgctacagtcgctgtgaacaatttcaatatagataaatctcaaga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29199437 |
aaaatgcttaaaaattaaaattgacttattttcacatagcaattcaagaatatgttgctacagtcgctgtgaacaatttcaatatagataaatctaaaga |
29199338 |
T |
|
| Q |
101 |
gaaaaaataggaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaactt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29199337 |
gaaaaaatatgaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaactt |
29199238 |
T |
|
| Q |
201 |
tatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttctccttctcattttgcagatgatttaagagctctgagtgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
29199237 |
tatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttctccttctcattttgcacatgatttaagagctttgagtgg |
29199138 |
T |
|
| Q |
301 |
cattttcacttccaaattatcaaacattgaatccaaccaaacacatagaaattactctataactataactttttgaagcaataacattcaaaaa |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29199137 |
cattttcacttccaaattatcaaacattgaatccaaccaaacacatagaaattactctataactataactttttgaagcaataacatccaaaaa |
29199044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 136 - 288
Target Start/End: Complemental strand, 19768956 - 19768803
Alignment:
| Q |
136 |
tgttctagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaa-at |
234 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
19768956 |
tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct |
19768857 |
T |
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| Q |
235 |
tcaaacaaaatcagcttctcaaatttctccttctcattttgcagatgatttaag |
288 |
Q |
| |
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||| |||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
19768856 |
aaaaaaaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaag |
19768803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 384 - 484
Target Start/End: Complemental strand, 29204030 - 29203931
Alignment:
| Q |
384 |
acattcaaaaaatagtattcgccatgttccccactcttgtaccaatcttcgtattgaaccaaattaatctggctccatcatctatctttgttatatcctt |
483 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
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| T |
29204030 |
acattcaaaaactagtattcgccatgttccccactcttgtaccaaacttcgtattgaatcaaattaaagtggctccatcatctatc-ttgttatatcctt |
29203932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 29198438 - 29198406
Alignment:
| Q |
384 |
acattcaaaaaatagtattcgccatgttcccca |
416 |
Q |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
29198438 |
acattcaaaaactagtattcgccatgttcccca |
29198406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25901030 - 25901225
Alignment:
| Q |
1 |
aaaatgcttaaaaattaaaattgacttattttcaca-tagcaattcaagaatatgttgctacagtcgctgtgaacaatttcaatatagataaatctcaag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||| |||||||||||||||| ||||||||||||||| |
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| T |
25901030 |
aaaatgcttaaaaattaaaattgacttattttcacagtagcaattcatgaatatgttgcaatcgtcaatgtgaacaatttcaatgtagataaatctcaag |
25901129 |
T |
|
| Q |
100 |
agaaaaaataggaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
195 |
Q |
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||||||| || |||||||||||||||| || ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901130 |
agaaaaagtatgaataagagaacatgaagacccatctattctagtttcttctatggcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
25901225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 50227374 - 50227416
Alignment:
| Q |
172 |
gaaacaaataaaagtggaagaagaaactttatccataagaacc |
214 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
50227374 |
gaaacaaataaaagtgaaagaagaaactttacccataagaacc |
50227416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 5478268 - 5478236
Alignment:
| Q |
253 |
tcaaatttctccttctcattttgcagatgattt |
285 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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| T |
5478268 |
tcaaatttctccttctcattttgcacatgattt |
5478236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4351389 - 4351267
Alignment:
| Q |
1 |
aaaatgcttaaaaattaaaattgacttattttcaca-tagcaattcaagaatatgttgctacagtcgctgtgaacaatttcaatatagataaatctcaag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||| |||| ||| ||| ||| | ||||||||||||||||| |||||||||| ||| |
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| T |
4351389 |
aaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaatgggtttctatagttggtgtgaacaatttcaataaagataaatctgaag |
4351290 |
T |
|
| Q |
100 |
agaaaaaataggaataagagaac |
122 |
Q |
| |
|
|||||||||| |||||||||||| |
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| T |
4351289 |
agaaaaaatatgaataagagaac |
4351267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15630 - 15751
Alignment:
| Q |
1 |
aaaatgcttaaaaattaaaattgacttattttcaca-tagcaattcaagaatatgttgctacagtcgctgtgaacaatttcaatatagataaatctcaag |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| | |||||||||| |||| ||| ||| ||| | ||||||||||||||||| |||||||||| ||| |
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|
| T |
15630 |
aaaatgcttaaaaattaaaattggcttattttcatagtagcaattcatgaatgggtttctatagttggtgtgaacaatttcaataaagataaatctgaag |
15729 |
T |
|
| Q |
100 |
agaaaaaataggaataagagaac |
122 |
Q |
| |
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|| ||||||| |||||||||||| |
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|
| T |
15730 |
ag-aaaaatatgaataagagaac |
15751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 2685044 - 2685076
Alignment:
| Q |
253 |
tcaaatttctccttctcattttgcagatgattt |
285 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
2685044 |
tcaaatttctccttctcattttgcacatgattt |
2685076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 45008469 - 45008501
Alignment:
| Q |
253 |
tcaaatttctccttctcattttgcagatgattt |
285 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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|
| T |
45008469 |
tcaaatttctccttctcattttgcacatgattt |
45008501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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