View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_15 (Length: 480)
Name: NF15217_low_15
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 51729085 - 51728641
Alignment:
| Q |
17 |
tacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729085 |
tacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcgaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttt |
51728986 |
T |
|
| Q |
117 |
tgatggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatacctttgtacaggtaagaagtactt |
216 |
Q |
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| T |
51728985 |
taatggaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtacccctctggccttatacctttgtacaggtaagaagtactt |
51728886 |
T |
|
| Q |
217 |
gtttgtgattcatttcgcgctttgaaattaaatgaatatactagagaaactaatagcttgatttatgctaatcatgatagaggaaccatccatccattga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728885 |
gtttgtgattcatttcgcgctttgaaattaaatgaatatactagagaaactaatagcttgatttatgctaatcatgatagaggaaccatccatccattga |
51728786 |
T |
|
| Q |
317 |
ttccaaacatggcttttgtgggatatgttgagacctattcaaatctttactcttcagagtaacgcacaatgtggctttcaggacttgtggatgacaaatt |
416 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
51728785 |
ttccaaacatggctttcgtgggatacgttgagacctattcaaatctttactcttcagagttacgcacaatgtggctttcaggacttgtggatgacaagtt |
51728686 |
T |
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| Q |
417 |
caagcttccaaaagttgaaagaatgctatcacaaactcttaagga |
461 |
Q |
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| T |
51728685 |
caagcttccaaaagttgaaagaatgctatcacaaactcttaagga |
51728641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 434
Target Start/End: Complemental strand, 51723591 - 51723423
Alignment:
| Q |
265 |
actaatagcttgatttatgctaatcatgatagaggaaccatccatccattgattccaaacatggcttttgtgggatatgttgagacctattcaaatcttt |
364 |
Q |
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||||||||||||| | || |||||| |||| | |||| ||||||||||||||| |||||| ||||||||| ||||||||||||| |||||| || |
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| T |
51723591 |
actaatagcttgagtcattctaatcgtgatcggagaactatccatccattgatttcaaacaaggcttttgt-ggatatgttgagagtgtttcaaagctac |
51723493 |
T |
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| Q |
365 |
actcttcagagtaacgcacaatgtggctttcaggacttgtggatgacaaattcaagcttccaaaagttga |
434 |
Q |
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| T |
51723492 |
actctttagagctatgctcgatattgctttacggacttgtagatgacaatttcaagcttgcaaaagttga |
51723423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 19056734 - 19056891
Alignment:
| Q |
22 |
aaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatg |
121 |
Q |
| |
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|||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| ||||| |
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| T |
19056734 |
aaaagagcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatg |
19056833 |
T |
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| Q |
122 |
gaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtaccc |
179 |
Q |
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| || || ||| ||||||||||||| ||||||||||||| |||| ||||||| ||||| |
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| T |
19056834 |
ggaaaaagaagctcaaaaccattttgccagagcctttttctagcttgttggaataccc |
19056891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 19188465 - 19188308
Alignment:
| Q |
22 |
aaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatg |
121 |
Q |
| |
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|||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| ||||| |
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| T |
19188465 |
aaaagagcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatg |
19188366 |
T |
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| Q |
122 |
gaaagaaaaagatcaaaaccattttaccagagcctttttgtagcctgttggagtaccc |
179 |
Q |
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| || || ||| ||||||||||||| ||||||||||||| |||| ||||||| ||||| |
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| T |
19188365 |
ggaaaaagaagctcaaaaccattttgccagagcctttttctagcttgttggaataccc |
19188308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 19059514 - 19059587
Alignment:
| Q |
293 |
atagaggaaccatccatccattgattccaaacatggcttttgtgggatatgttgagacctattcaaatctttac |
366 |
Q |
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|||||||||| | ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |
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| T |
19059514 |
atagaggaactgttcatccattgattccaaacatggcctttgtgggttatgttgagagtgtttcaaatctttac |
19059587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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