View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_16 (Length: 445)
Name: NF15217_low_16
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 4367662 - 4367339
Alignment:
| Q |
16 |
atcacactcacattcacagtaaaaaagttcacaagtaacaaacaaatcacaatcatagaaataaacccacattaccaacaaaaatgaactgcgtgcaatt |
115 |
Q |
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| T |
4367662 |
atcacactcacattcacagtaaaaaagttcacaagtaacaaacaaatcacaatcatagaaataaacccacattaccaacaaaaatgaactgcgtgcaatt |
4367563 |
T |
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| Q |
116 |
tccccccatcaagctaccaaaacatgaaaaagcttaaaccataacaccaattcaaacaacaatttacacatgcacnnnnnnnaacacaatttacacatgc |
215 |
Q |
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| T |
4367562 |
tccccccatcaagccaccaaaacatgaaaaagcttaaaccataacaccaattcaaacaacaatttacacatgcactttttttaacacaatttacacatgc |
4367463 |
T |
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| Q |
216 |
acttaaaactaaaagataaacactagcatggaatcaaaaaatgaaccttttcaggaataacaaagccattgctatcttcttcaccagcattagccttatc |
315 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367462 |
acttaaaactaaaagataaacacttgcatggaatcaaaaaatgaaccttttcaggaataacaaagccattgctatcttcttcaccagcattagccttatc |
4367363 |
T |
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| Q |
316 |
aatgctatgaccaccacgattaaa |
339 |
Q |
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|||||||||||||||||||||||| |
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| T |
4367362 |
aatgctatgaccaccacgattaaa |
4367339 |
T |
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