View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_18 (Length: 426)
Name: NF15217_low_18
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 48837123 - 48837545
Alignment:
| Q |
1 |
atttctggcagtgaagtgggagtgatctagtactgttcaggattaacttatctgtttctaatattttgttgcagtcacttttggggtcatcattcaccga |
100 |
Q |
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| T |
48837123 |
atttctggcagtgaagtgggagtgatctagtactgttcaggattaacttatctgtttctaatattttgttgcagtcacttttggggtcatcattcaccga |
48837222 |
T |
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| Q |
101 |
tcataataaaatcttgttattccaaggtggaatgaaaaataaaaattgaaccaaaatcatcaaatccttttactttcaattttgtgcactcatttaccca |
200 |
Q |
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| T |
48837223 |
tcataa---aatcttgttattccaaggtggaatgaaaaataaaaattgaaccaaaatcatcaaatccttttactttcaattttgtgcactcatttaccca |
48837319 |
T |
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| Q |
201 |
tttattgtgatttatatactgacataacgtgatgcataagagctaaaaatgtaccatgaaaagagtcacgggttcttatacattgttttgatgatatctg |
300 |
Q |
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| T |
48837320 |
tttattgtgatttatatactgacataacgtgatgcataagagctaaaaatgtaccatgaaaagagtcacgggttcttatacattgttttgatgatatctg |
48837419 |
T |
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| Q |
301 |
ccatgtgatacgaccagcatacgattttatgaagtgacaagctttaagctccaatttcttggaccaatatctgaatcacattcttcttttctgaacatat |
400 |
Q |
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| T |
48837420 |
ccatgtgatacgaccagcagacgattttatgaagtgacaagctttaagctccaatttcttggaccaatatctgaatcacattcttcttttctgaacatat |
48837519 |
T |
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| Q |
401 |
aaataactgctattcatgattacatt |
426 |
Q |
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| T |
48837520 |
aaataactgctattcatgattacatt |
48837545 |
T |
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