View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_20 (Length: 419)
Name: NF15217_low_20
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_20 |
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| [»] scaffold0271 (2 HSPs) |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: scaffold0271 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 14363 - 14759
Alignment:
| Q |
13 |
aatatcaaattgacctatgcagatcaagggtatatgttacctggattacttcatattcatgtcattcatcatcatataatcataacaattcacatcaatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14363 |
aatatcaaattgacctatgcagatcaagggtatatgttacctggattacttcatattcatgccattcatcatcatataatcataacaattcacatcaatc |
14462 |
T |
|
| Q |
113 |
gatggatacagagcatagcaacaaaataatcaaaactcaagttgagacaactactcacgctgttttaatttaaggattaaagttgattagctaagattct |
212 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14463 |
gatggatacagagcagagcaacaaaataatcaaaactcaagttgagacaactactcatgctgttttaatttaaggattaaagttgattagctaagattct |
14562 |
T |
|
| Q |
213 |
ataaactacaattaaagca-ccccatcaacccaaacaacggtaacagtcatgtttgtgctatgaaacattataaaatcacatgtgttgctatgccgcgac |
311 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
14563 |
ataaactacaattaaagcacccccataaacccaaacaacggtaagagtcatgtttgtgctatgaaacattataaaatcacatgtgttacaatgccgtgac |
14662 |
T |
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| Q |
312 |
acgccttctatcaaaagtgttattcagatgttaaatcaaaattttagtaattggctgaatacaatcaatactactatcataagatagtagtatttga |
408 |
Q |
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| T |
14663 |
acgccttctatcaaaagtgttattcagatgttaaatcaaaattttagtaattggctgattacaatcgatactactatcataagatagtagtatttga |
14759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 3714 - 3748
Alignment:
| Q |
9 |
gaagaatatcaaattgacctatgcagatcaagggt |
43 |
Q |
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| T |
3714 |
gaagaatatcaaattgacctatgcagatcaagggt |
3748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 32 - 408
Target Start/End: Original strand, 1 - 378
Alignment:
| Q |
32 |
cagatcaagggtatatgttacctggattacttcatattcatgtcattcatcatcatataatcataacaattcacatcaatcgatggatacagagcatagc |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1 |
cagatcaagggtatatgttacctggattacttcatattcatgccattcatcatcatataatcataacaattcacatcaatcgatggatacagagcagagc |
100 |
T |
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| Q |
132 |
aacaaaataatcaaaactcaagttgagacaactactcacgctgttttaatttaaggattaaagttgattagctaagattctataaactacaattaaagca |
231 |
Q |
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| T |
101 |
aacaaaataatcaaaactcaagttgagacaactactcatgctgttttaatttaaggattaaagttgattagctaagattctataaactacaattaaagca |
200 |
T |
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| Q |
232 |
-ccccatcaacccaaacaacggtaacagtcatgtttgtgctatgaaacattataaaatcacatgtgttgctatgccgcgacacgccttctatcaaaagtg |
330 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
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| T |
201 |
cccccataaacccaaacaacggtaagagtcatgtttgtgctatgaaacattataaaatcacatgtgttacaatgccgtgacacgccttctatcaaaagtg |
300 |
T |
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| Q |
331 |
ttattcagatgttaaatcaaaattttagtaattggctgaatacaatcaatactactatcataagatagtagtatttga |
408 |
Q |
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| T |
301 |
ttattcagatgttaaatcaaaattttagtaattggctgattacaatcgatactactatcataagatagtagtatttga |
378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 41415823 - 41415602
Alignment:
| Q |
13 |
aatatcaaattgacctatgca----gatcaagggtatatgttacctggattacttcatattcatgtcattcatcatcatataatcataacaattcacatc |
108 |
Q |
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||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
41415823 |
aatatcaaattgacctaagcaagcagatcaagggtgcctgttacctggattacttcatattcatgtaattcatcatcatatattcataacaattcacatc |
41415724 |
T |
|
| Q |
109 |
aatcgatggatacagagcatagcaacaaaataatcaaaactcaagttgagacaactactcacgctgttttaatttaaggattaaagttgattagctaaga |
208 |
Q |
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||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||| | |
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| T |
41415723 |
aattgatggatacggagcatagcaacaaaataatcaagactcaagttaagacaactactcacgctg-tttaatttaaggatcaaagtcgattagctaata |
41415625 |
T |
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| Q |
209 |
ttctataaactacaattaaagca |
231 |
Q |
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|||||||| ||| |||||||||| |
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| T |
41415624 |
ttctataatctataattaaagca |
41415602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 41417599 - 41417391
Alignment:
| Q |
13 |
aatatcaaattgacctatgcagatcaagggtatatgttacctggattacttcatattcat--gtcatt-catcatcatataat----cataacaattcac |
105 |
Q |
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||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||| |||| ||| |||| || | ||||| |||||| |
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| T |
41417599 |
aatatcaaattgacctatgcagatcaagggtgtctgtttcctggattgcttcatattcataagtcacaacatattcatgtagtttttcataa--attcac |
41417502 |
T |
|
| Q |
106 |
atcaatcgatggatacagagcatagcaacaaaataatcaaaactcaagttgagacaactactcacgctgttttaatttaaggattaaagttgattagcta |
205 |
Q |
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||| || | || ||||||||||||||||||||| ||||| | ||||||||||||||||||||| | |||||||||||||||||| | || || ||||| |
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| T |
41417501 |
atccatagtggggtacagagcatagcaacaaaattatcaagagtcaagttgagacaactactcagacggttttaatttaaggattatacttaatgagcta |
41417402 |
T |
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| Q |
206 |
agattctataa |
216 |
Q |
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||||||||||| |
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| T |
41417401 |
agattctataa |
41417391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 5576 - 5542
Alignment:
| Q |
9 |
gaagaatatcaaattgacctatgcagatcaagggt |
43 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
5576 |
gaagaatatcaaattgacctatgcagatcaagggt |
5542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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