View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_28 (Length: 361)
Name: NF15217_low_28
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 10091832 - 10092007
Alignment:
| Q |
20 |
atcatagcagttcgatatatttttctaccaatttctggtattctaattgttaaaggggcaacacatttgggtttggtgcaagtaagtagatcctttatat |
119 |
Q |
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| T |
10091832 |
atcatagcagttcgatatatttttctaccaatttctggtattctaattgttaaaggggcaacacatttgggtttggtgcaagt----agatcctttatat |
10091927 |
T |
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| Q |
120 |
cagtttattcttctccttcaatatgcacttcctccagctatgagcataggtagcaattaaacttttatgatcttcttagt |
199 |
Q |
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| T |
10091928 |
cagtttattcttctccttcaatatgcacttcctccagctatgagcataggtagtaattaaacttttatgatcttcttagt |
10092007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 10097206 - 10097382
Alignment:
| Q |
20 |
atcatagcagttcgatatatttttctaccaatttctggtattctaattgttaaaggggcaacacatttgggtttggtgcaagtaagtagatcctttatat |
119 |
Q |
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| T |
10097206 |
atcatagtagttcgatatatcttgctcccaatttttggagttctaattattaaaggtgcaacacatttgggtttggtgc----aaatagatcccttatat |
10097301 |
T |
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| Q |
120 |
cagtttattcttctccttcaatatgcacttcctccagctatgagcataggtagcaattaaacttttatgatcttcttagtc |
200 |
Q |
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| T |
10097302 |
cagtttgtacttctccttcaatatgcacttccaccagccatgaatataggtaatacataaacttttattattttcttagtc |
10097382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 10091994 - 10092051
Alignment:
| Q |
222 |
atgatcttcttagttatagttcagtcaaattgtacaccattaatatatatgttctttt |
279 |
Q |
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| T |
10091994 |
atgatcttcttagttatagttcagtcaaattgtacaccattaatatatatgttctttt |
10092051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 30670017 - 30669953
Alignment:
| Q |
107 |
agatcctttatatcagtttattcttctccttcaatatgcacttcctccagctatgagcataggta |
171 |
Q |
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| T |
30670017 |
agatcctttatatcagtttgtacttctacttcaatatgcacttccaccagctatgaatataggta |
30669953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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