View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_30 (Length: 348)
Name: NF15217_low_30
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 33038357 - 33038675
Alignment:
| Q |
14 |
atcaaagcaaaaatatcttaataaaatctagtgtgtctttgcatcactaaatttggtgtattatgcttggttaattaagtgtttatcttcaaagcaccaa |
113 |
Q |
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| T |
33038357 |
atcaaagcaaaaatatcttaataaaatctagtgtgtctttgcatcactaaatttggtgtattatgcttgattaattaagtgtttatcttcaaagcaccaa |
33038456 |
T |
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| Q |
114 |
ccatgcattggccaaaataatagttaaagttaaggggaaacttggagaaagaatattagagaagcacttgtataaagcgatgacaaggcaaagtttataa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33038457 |
ccatgcattggccaaaataatagttaaagttaaggggaaacttggagaaagaatattagagaagcacttgtataaagggatgacaaggcaaagtttataa |
33038556 |
T |
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| Q |
214 |
agtaaatactatgcatatcttacaaaaagtactttatgaagaatataatatctttagcaaaattggatcttgcattgcatgatgcttttgggttgaacca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33038557 |
agtaaatactatgcatatcttacaaaaagtactttatgaagaatataatatctttagcaaaattggatcttgcattgcatgatgcttttgggttgaacca |
33038656 |
T |
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| Q |
314 |
accaatgttaaacataatt |
332 |
Q |
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||||||||||||||||||| |
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| T |
33038657 |
accaatgttaaacataatt |
33038675 |
T |
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