View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_34 (Length: 324)
Name: NF15217_low_34
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 4008206 - 4008486
Alignment:
| Q |
19 |
cttgaactgttcagaagctgttaatgggaacaatacagtctttagtgattcacattcacccaatagagtttcaagtgatgatggaagcactggtagagtc |
118 |
Q |
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| T |
4008206 |
cttgaactgttcagaagctgttaaagggaaccatacagtcttcagtgattcacattcagccaatagagtttcaagtgatgatggaagctctggtatagtc |
4008305 |
T |
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| Q |
119 |
ataagcttgatgcaaaaggtcaggtttatatatcttagtctagtaagnnnnnnnatgcttgaaggtatcctctcaattctacagcctcttaaaatcaggg |
218 |
Q |
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| T |
4008306 |
cgaagcttgatgcaaaaagtcaggtttatatatcttagtctagtacgattttttatgcttggaggtatcctctcaattctacagcctttgaaaatcaggg |
4008405 |
T |
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| Q |
219 |
tttctagcgtgctttgagatccaaaagacaatggcagttcattgatccaactcttagttagatcttgtcctggaaaattat |
299 |
Q |
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| T |
4008406 |
tttctagcgtgctttgagatccaaaagataatggcagttcattgatccaactcttagttagatcttgtcctggaaatttat |
4008486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 4023364 - 4023628
Alignment:
| Q |
19 |
cttgaactgttcagaagctgttaatgggaacaatacagtctttagtgattcacattcacccaatagagtttcaagtgatgatggaagcactggtagagtc |
118 |
Q |
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|||||| ||||||||| ||||| | ||||||||||||||||| |||||| ||||||| | | ||||||||||| |||||| |||||| | |||||| | |
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| T |
4023364 |
cttgaattgttcagaaactgttgaagggaacaatacagtcttcagtgatctacattcaacaagtagagtttcaactgatgaaggaagctcgggtagaacc |
4023463 |
T |
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| Q |
119 |
ataagcttgatgcaaaaggtcaggtttatatatcttagtctagtaagnnnnnnnatgcttgaaggtatcctctcaattctacagcctcttaaaatcaggg |
218 |
Q |
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| T |
4023464 |
aggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaagattcttgatgcttgaaggtatgctctcaatttcactgtatcttaaaaccagta |
4023563 |
T |
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| Q |
219 |
tttctagcgtgctttgagatccaaaagacaatggcagttcattgatccaactcttagttagatct |
283 |
Q |
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| T |
4023564 |
tttctagcctgctttgacatccaaaagatgatggcagtgcattgatacaaatgttagttagatct |
4023628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 264
Target Start/End: Original strand, 3985295 - 3985533
Alignment:
| Q |
26 |
tgttcagaagctgttaatgggaacaatacagtctttagtgattcacattcacccaatagagtttcaagtgatgatggaagcactggtagagtcataagct |
125 |
Q |
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| T |
3985295 |
tgttcagcaactgttgaagggaaaaatacagacttcagtgacacacagtcaacaagtagagtttcaagtgatgatggaagctcaggtagagccagaagct |
3985394 |
T |
|
| Q |
126 |
tgatgcaaaaggtcaggtttatatatcttagtctagtaagnnnnnnnatgcttgaaggtatcctctcaattctacagcctcttaaaatcagggtttctag |
225 |
Q |
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| T |
3985395 |
ccgagcaatcgcttatgtctaattttcttagtcttgtaagatccttgatgcttgaaggtatgctctcaatttgagtacctcttaaaaccagggtttctag |
3985494 |
T |
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| Q |
226 |
cgtgctttgagatccaaaagacaatggcagttcattgat |
264 |
Q |
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| T |
3985495 |
cttgctttgacatccaaaagatgatggcagtgcattgat |
3985533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 4000448 - 4000555
Alignment:
| Q |
19 |
cttgaactgttcagaagctgttaatgggaacaatacagtctttagtgattcacattcacccaatagagtttcaagtgatgatggaagcactggtagagtc |
118 |
Q |
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|||||| ||||||||| |||| | ||||||||||||||||| |||||| ||||||| | | ||||||||||| |||| | |||||||| ||||||| | |
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| T |
4000448 |
cttgaattgttcagaaattgttgaagggaacaatacagtcttcagtgatatacattcaacaagtagagtttcaactgataaaggaagcacaggtagagcc |
4000547 |
T |
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| Q |
119 |
ataagctt |
126 |
Q |
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| T |
4000548 |
agaagctt |
4000555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 3921870 - 3921622
Alignment:
| Q |
19 |
cttgaactgttcagaagctgttaatgggaacaatacagtctttagtgattcaca---ttcacccaatagagtttcaagtgatgatggaagcactggtaga |
115 |
Q |
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|||||| ||||||| | ||||| | ||||||||||||||||||||||||||||| ||| | | |||| |||||| |||||| |||||| | |||||| |
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| T |
3921870 |
cttgaattgttcagcaactgttgaagggaacaatacagtctttagtgattcacagttgtcaacaagtagactttcaactgatgaaggaagctcgggtaga |
3921771 |
T |
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| Q |
116 |
gtcataagcttgatgcaaaaggtcaggtttatatatcttagtctagtaagnnnnnnnatgcttgaaggtatcctctcaattctacagcctcttaaaatca |
215 |
Q |
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|| ||||||| || |||| | || || | ||||||||| ||||| ||||||||| |||| ||||||||| | | | |||||| ||| |
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| T |
3921770 |
accagaagcttgttggaaaatcgtatgtataattttcttagtcttgtaagattcttgatgcttgaatgtatgctctcaatttcagtgtcacttaaattca |
3921671 |
T |
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| Q |
216 |
gggtttctagcgtgctttgagatccaaaagacaatggcagttcattgat |
264 |
Q |
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| T |
3921670 |
gggtttctagattgctttgacatccaaaagatgatggcagtgcattgat |
3921622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 3808485 - 3808576
Alignment:
| Q |
173 |
atgcttgaaggtatcctctcaattctacagcctcttaaaatcagggtttctagcgtgctttgagatccaaaagacaatggcagttcattgat |
264 |
Q |
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|||||||||||||| ||||||||| || | |||||| ||||||||||||| |||||||| |||||||||| |||||||| ||||||| |
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| T |
3808485 |
atgcttgaaggtatgctctcaattttagtgtaacttaaattcagggtttctagattgctttgacatccaaaagatgatggcagtgcattgat |
3808576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 3934932 - 3934841
Alignment:
| Q |
173 |
atgcttgaaggtatcctctcaattctacagcctcttaaaatcagggtttctagcgtgctttgagatccaaaagacaatggcagttcattgat |
264 |
Q |
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|||||||||||||| ||||||||| | | || |||||| |||||||||||| |||||||| |||||||||| |||||||| ||||||| |
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| T |
3934932 |
atgcttgaaggtatgctctcaatttgagtggcttttaaaaccagggtttctagattgctttgacatccaaaagatgatggcagtgcattgat |
3934841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 3957303 - 3957221
Alignment:
| Q |
44 |
gggaacaatacagtctttagtgattcacattcacccaatagagtttcaagtgatgatggaagcactggtagagtcataagctt |
126 |
Q |
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| T |
3957303 |
gggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggtagagccacaagctt |
3957221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 13396159 - 13396241
Alignment:
| Q |
44 |
gggaacaatacagtctttagtgattcacattcacccaatagagtttcaagtgatgatggaagcactggtagagtcataagctt |
126 |
Q |
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||||||| ||||| ||| ||||| | ||||||| | | |||||||||||||||||| |||||||| |||| || || |||||| |
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| T |
13396159 |
gggaacactacagacttcagtgacttacattcaacaattagagtttcaagtgatgaaggaagcacaggtacagccagaagctt |
13396241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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