View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_4 (Length: 616)
Name: NF15217_low_4
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Original strand, 34571005 - 34571578
Alignment:
| Q |
18 |
gttcttccatagcatcaaactctaatatctctgcatattagtatataaaaccaatacagaatataagtaaataaacattcaaattgaaacaannnnnnna |
117 |
Q |
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| T |
34571005 |
gttcttccatagcatcaaactctaatatctctgcatattagtatataaaaccaatacagaatataagtaaagaaacattcaaattgaaacaattttttta |
34571104 |
T |
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| Q |
118 |
gcaattaagtggcaagtcagaaggacaaaccattccattgaggatctgatgtctcaagcttgacagagcttgaccttgtttgtccattacaggtgaaaac |
217 |
Q |
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| T |
34571105 |
gcaattaagtggcaagtcagaaggacaaaccattccattgaggatctgatgtctcaagcttgacagagcttgaccttgtttgtccattacaggtgaaaac |
34571204 |
T |
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| Q |
218 |
cacataaggatctgacaaccctgttgactccaatgagactaggtcaacaccctcaattaaagctacagtaacaacccatccatcaccatgtgctttcatg |
317 |
Q |
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| T |
34571205 |
cacataaggatctgacaaccctgttgactccaatgagactaggtcaacaccctcaattaaagctacagtaacaacccatccatcaccatgtgctttcatg |
34571304 |
T |
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| Q |
318 |
ccatggtcagttcctattagaagagaatgaagtcaaaactaaacgcctacatgaatttacctgacaagtatgaagtgctgacacagatacggacagcaga |
417 |
Q |
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| T |
34571305 |
ccatggtcagttcctattagaagagaatgaagtcaaaactaatcgcctacatgaatttacttgacaagtatgaagtgctgacacagatacgga------- |
34571397 |
T |
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| Q |
418 |
cataaagaccggtaatagtttgcgaaaagaaaagtgtcttgttggtgttaggcaccggatacacc------ttcaatctgaaagtgtcggtgcaacatag |
511 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34571398 |
------------tattagtttgcgaaaagaaaagtgtcttgttggtgttaggcaccggatacaccttcaatttcaatctgaaagtgtcggtgcaacatag |
34571485 |
T |
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| Q |
512 |
atttacggtgataacaagtacaataatagtaggttcaaataacatgcttacccatttgaaatctagcttgcacaaaatgagataccagatgat |
604 |
Q |
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| T |
34571486 |
atttacggtgataacaagtacaataatagtaggttcaaataacatgcttacccatttgaaatctagcttgcacaaaatgagataccatatgat |
34571578 |
T |
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