View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15217_low_45 (Length: 268)
Name: NF15217_low_45
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_45 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 45103815 - 45104065
Alignment:
| Q |
18 |
tgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaagcagtttatcatcttctagtgagatggacggttcagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103815 |
tgatgatgaagaagagttcttgagagacataattcttcagcaacctgttacatattctggaagcagtttatcatcttctagtgagatggacggttcagat |
45103914 |
T |
|
| Q |
118 |
agctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaatctaccataataccagctactactacac |
217 |
Q |
| |
|
|||||||||||||| ||||||| || |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103915 |
agctcggggaaaaaacttcatcttttatcaacaccatccactccaaggacattcattctctcttttgataaatctaccataataccagctactactacac |
45104014 |
T |
|
| Q |
218 |
cagaatcagaagaagtgtcaagaccaaagagtataagtaataataataaga |
268 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
45104015 |
cagaatcagaagaagtaccaagaacaaagagtagaagtaataataataaga |
45104065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 45130444 - 45130691
Alignment:
| Q |
18 |
tgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaagcagtttatcatcttctagtgagatggacggttcagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||| |||| ||||||||| || |||||| |
|
|
| T |
45130444 |
tgatgatgaagaagagttcttgagagacataatccttcagcaacctgttacatattctggaagta---tatcatcctctaatgagatggatggctcagat |
45130540 |
T |
|
| Q |
118 |
agctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaatctaccataataccagctactactacac |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45130541 |
tgctcaaagaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaatctaccataataccagctactactacac |
45130640 |
T |
|
| Q |
218 |
cagaatcagaagaagtgtcaagaccaaagagtataagtaataataataaga |
268 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
45130641 |
cagaatcagaagaagtgtcaataccaaagagtagaagtaataataataaga |
45130691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University