View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_46 (Length: 265)
Name: NF15217_low_46
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_46 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 27526014 - 27526266
Alignment:
| Q |
13 |
atacttgcaatttctcttacaactagtgttgtatagttttttatgttataatacttcatgcataattttgaattccatggacttttatcttatcatacgt |
112 |
Q |
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| T |
27526014 |
atacttgcaatttctcttactactagtgttgtatagttttttatgttaaaatacttcatgcataattttaaattccatggacttttatcttatcatacgt |
27526113 |
T |
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| Q |
113 |
aattttgaactttggtttcgtaactcctttaatcctcaactcaaaccagttgaactcaaaccatgacattcttatatataggtatcctgttatgactcgg |
212 |
Q |
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| T |
27526114 |
aattttgaactttggtttcgtaactcctttaatcctcaactcaaaccagttgaactcaaaccatgacattcttatatataggtatcctgttatgactcgg |
27526213 |
T |
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| Q |
213 |
gctttagcgaaagcaggtcgtccaatcttcttttcgctatgtgaatggtaatt |
265 |
Q |
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| T |
27526214 |
gctttagcgaaagcaggtcgtccaatcttcttttcgctatgtgaatggtaatt |
27526266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 27531672 - 27531756
Alignment:
| Q |
181 |
ttcttatatataggtatcctgttatgactcgggctttagcgaaagcaggtcgtccaatcttcttttcgctatgtgaatggtaatt |
265 |
Q |
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| T |
27531672 |
ttcttatgtataggtatcctgttatgactcgcgctttaatgaaggcaggtcgtccaatcttcttttcgctatgtgaatggtaatt |
27531756 |
T |
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