View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15217_low_48 (Length: 263)

Name: NF15217_low_48
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15217_low_48
NF15217_low_48
[»] chr8 (12 HSPs)
chr8 (43-245)||(36465946-36466157)
chr8 (1-38)||(11993873-11993910)
chr8 (1-38)||(13327759-13327796)
chr8 (1-40)||(12763413-12763452)
chr8 (1-39)||(23429888-23429926)
chr8 (1-38)||(2335413-2335450)
chr8 (1-38)||(7483724-7483761)
chr8 (1-38)||(14263524-14263561)
chr8 (1-45)||(16656674-16656718)
chr8 (1-41)||(16701116-16701156)
chr8 (1-41)||(18842507-18842547)
chr8 (1-45)||(23848779-23848823)
[»] chr5 (9 HSPs)
chr5 (1-39)||(6007844-6007882)
chr5 (1-40)||(7579888-7579927)
chr5 (1-39)||(1795337-1795375)
chr5 (1-39)||(18794744-18794782)
chr5 (1-39)||(38297837-38297875)
chr5 (1-38)||(3686356-3686393)
chr5 (1-38)||(4175700-4175737)
chr5 (1-38)||(28463605-28463642)
chr5 (1-38)||(38363153-38363190)
[»] chr7 (8 HSPs)
chr7 (1-42)||(17896749-17896790)
chr7 (5-45)||(20035021-20035061)
chr7 (5-45)||(20045432-20045472)
chr7 (1-39)||(35112408-35112446)
chr7 (1-38)||(12838304-12838341)
chr7 (1-38)||(18470287-18470324)
chr7 (1-38)||(32966275-32966312)
chr7 (1-38)||(47408118-47408155)
[»] chr4 (13 HSPs)
chr4 (1-42)||(3436291-3436332)
chr4 (1-40)||(36408704-36408743)
chr4 (1-40)||(36422870-36422909)
chr4 (5-38)||(16465010-16465043)
chr4 (1-38)||(16664224-16664261)
chr4 (1-38)||(29295337-29295374)
chr4 (1-38)||(37502004-37502041)
chr4 (1-38)||(38617531-38617568)
chr4 (1-38)||(39923770-39923807)
chr4 (1-38)||(47751520-47751557)
chr4 (1-38)||(53125462-53125499)
chr4 (1-38)||(56576327-56576364)
chr4 (5-41)||(1146027-1146063)
[»] chr3 (10 HSPs)
chr3 (1-38)||(43554370-43554407)
chr3 (1-45)||(790523-790567)
chr3 (1-40)||(53745510-53745549)
chr3 (1-39)||(39867077-39867115)
chr3 (1-39)||(40319157-40319195)
chr3 (1-39)||(52627467-52627505)
chr3 (1-38)||(48214047-48214084)
chr3 (1-41)||(13167993-13168033)
chr3 (1-37)||(48151966-48152002)
chr3 (1-45)||(53281952-53281996)
[»] chr2 (7 HSPs)
chr2 (1-46)||(34357150-34357195)
chr2 (1-41)||(10812176-10812216)
chr2 (1-40)||(26342558-26342597)
chr2 (1-39)||(34399181-34399219)
chr2 (1-38)||(14295983-14296020)
chr2 (1-38)||(32674191-32674228)
chr2 (1-42)||(41885601-41885642)
[»] chr6 (8 HSPs)
chr6 (1-40)||(17193136-17193175)
chr6 (1-39)||(364767-364805)
chr6 (1-39)||(3849044-3849082)
chr6 (1-39)||(17835872-17835910)
chr6 (1-39)||(24663358-24663396)
chr6 (1-38)||(9838346-9838383)
chr6 (1-38)||(17601364-17601401)
chr6 (1-38)||(23923937-23923974)
[»] chr1 (7 HSPs)
chr1 (1-40)||(18034046-18034085)
chr1 (1-44)||(32347953-32347995)
chr1 (1-39)||(1677195-1677233)
chr1 (1-39)||(35531515-35531553)
chr1 (1-38)||(28679001-28679038)
chr1 (5-41)||(1024533-1024569)
chr1 (3-31)||(9127654-9127682)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-39)||(49126-49164)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-39)||(184351-184389)
[»] scaffold0192 (1 HSPs)
scaffold0192 (1-42)||(14945-14986)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-41)||(138955-138995)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-45)||(419858-419901)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 43 - 245
Target Start/End: Complemental strand, 36466157 - 36465946
Alignment:
Q  43 tttgattaacaaatatcttttgactactctttaaagattttaaattaagaaagttaaagaatatctcagatctttaaggagttaaatacttcaattttca 142  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36466157 tttgattaacaaatatcttttgattactctttaaagattttaaattaagaaagttaaagaatatctcagatctttaaggagttaaatacttcaattttca 36466058  T
Q  143 atacatttaagatctttaaagaggaaaatgcatt---------tacctgttagcatttcctttaataaattagatagatatttaatgtgaacaatgcatt 233  Q
    || |||||||||||||||||||| ||||||||||         ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36466057 atgcatttaagatctttaaagagaaaaatgcatttattatatgtacttgttagcatttcctttaataaattagatagatatttaatgtgaacaatgcatt 36465958  T
Q  234 tatactaggtta 245  Q
    ||||||||||||    
T  36465957 tatactaggtta 36465946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11993910 - 11993873
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  11993910 tctccaaaagtgacacttaaaaaggaatggatggagta 11993873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13327796 - 13327759
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13327796 tctccaaaagtgacacttaaaaaggaacggatggagta 13327759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12763452 - 12763413
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatt 40  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  12763452 tctccaaaagtgacacttaaaaaggaacggaaggagtatt 12763413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23429926 - 23429888
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  23429926 tctccaaaagtgacacttaaaaaggaacggagggagtat 23429888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2335450 - 2335413
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  2335450 tctccaaaaatgacacttaaaaaggaacggatggagta 2335413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7483761 - 7483724
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  7483761 tctccaaaaatgacacttaaaaaggaacggatggagta 7483724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14263561 - 14263524
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  14263561 tctccaaaagtgacacttaaaaaggaacggagggagta 14263524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16656718 - 16656674
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaattt 45  Q
    |||||||||||||||||||||||| || ||| |||||||| ||||    
T  16656718 tctccaaaagtgacacttaaaaagaaacggagggagtatttattt 16656674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16701116 - 16701156
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatta 41  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  16701116 tctccaaaagtgacacttaaaaaggaacggagggaatatta 16701156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18842547 - 18842507
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatta 41  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  18842547 tctccaaaagtgacacttaaaaaggaacggagggaatatta 18842507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23848779 - 23848823
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaattt 45  Q
    ||||||||||||||||||||||||||| ||| | |||| ||||||    
T  23848779 tctccaaaagtgacacttaaaaaggaacggaggtagtaataattt 23848823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6007882 - 6007844
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  6007882 tctccaaaagtgacacttaaaaaggaacggatggagtat 6007844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7579888 - 7579927
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatt 40  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  7579888 tctccaaaagtgacacttaaaaaggaacggagggagtatt 7579927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1795337 - 1795375
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  1795337 tctccaaaagtgacacttaaaaaggaacggagggagtat 1795375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18794782 - 18794744
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  18794782 tctccaaaagtgacacttaaaaaggaatggagggagtat 18794744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 38297837 - 38297875
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  38297837 tctccaaaagtgacacttaaaaaggaacggagggagtat 38297875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3686393 - 3686356
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  3686393 tctccaaaagtgacacttaaaaaggaacggagggagta 3686356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4175700 - 4175737
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  4175700 tctccaaaagtgacacttaaaaaggaacggagggagta 4175737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28463605 - 28463642
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  28463605 tctccaaaagtgacacttaaaaaggaacggagggagta 28463642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38363190 - 38363153
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  38363190 tctccaaaagtaacacttaaaaaggaacggatggagta 38363153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17896749 - 17896790
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaa 42  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  17896749 tctccaaaagtgacacttaaaaaggaacggagggagtattaa 17896790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 20035061 - 20035021
Alignment:
Q  5 caaaagtgacacttaaaaaggaagggatggagtattaattt 45  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  20035061 caaaagtgacacttaaaaaggaacggatggagtatttattt 20035021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 20045472 - 20045432
Alignment:
Q  5 caaaagtgacacttaaaaaggaagggatggagtattaattt 45  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  20045472 caaaagtgacacttaaaaaggaacggatggagtatttattt 20045432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35112446 - 35112408
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  35112446 tctccaaaagtgacacttaaaaaggaacggagggagtat 35112408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12838304 - 12838341
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  12838304 tctccaaaagtgacacttaaaaaggaacggagggagta 12838341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18470324 - 18470287
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  18470324 tctccaaaagtgacacttaaaaaggaacggagggagta 18470287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32966275 - 32966312
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  32966275 tctccaaaagtgacacttaaaaaggaacggagggagta 32966312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47408155 - 47408118
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  47408155 tctccaaaagtgacacttaaaaaggaacggagggagta 47408118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3436291 - 3436332
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaa 42  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  3436291 tctccaaaagtgacacttaaaaaggaacggagggagtattaa 3436332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36408743 - 36408704
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatt 40  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  36408743 tctccaaaagtgacacttaaaaaggaacggagggagtatt 36408704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36422909 - 36422870
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatt 40  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  36422909 tctccaaaagtgacacttaaaaaggaacggagggagtatt 36422870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 16465010 - 16465043
Alignment:
Q  5 caaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||| ||||||||||    
T  16465010 caaaagtgacacttaaaaaggaacggatggagta 16465043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16664261 - 16664224
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  16664261 tctccaaaagtgacacttaaaaaggaacggagggagta 16664224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29295374 - 29295337
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  29295374 tctccaaaagtgacacttaaaaaggaaaggagggagta 29295337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37502041 - 37502004
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  37502041 tctccaaaagtgacacttaaaaaggaacggagggagta 37502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38617531 - 38617568
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  38617531 tctccaaaagtgacacttaaaaaggaacggagggagta 38617568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39923807 - 39923770
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  39923807 tctccaaaagtggcacttaaaaaggaacggatggagta 39923770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47751557 - 47751520
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  47751557 tctccaaaagtgacacttaaaaaggaacggaaggagta 47751520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 53125462 - 53125499
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  53125462 tctccaaaagagacacttaaaaaggaacggatggagta 53125499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 56576327 - 56576364
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  56576327 tctccaaaagtgacacttaaaaaggaacggagggagta 56576364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1146063 - 1146027
Alignment:
Q  5 caaaagtgacacttaaaaaggaagggatggagtatta 41  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  1146063 caaaagtgacaattaaaaaggaacggatggagtatta 1146027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43554407 - 43554370
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  43554407 tctccaaaagtgacacttaaaaaggaacggatggagta 43554370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 790567 - 790523
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaattt 45  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||    
T  790567 tctccaaaagtgacacttaaaaaggaacggagggagtatttattt 790523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 53745510 - 53745549
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatt 40  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  53745510 tctccaaaagtgacacttaaaaaggaacggagggagtatt 53745549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39867077 - 39867115
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  39867077 tctccaaaagagacacttaaaaaggaacggatggagtat 39867115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40319157 - 40319195
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  40319157 tctccaaaagagacacttaaaaaggaacggatggagtat 40319195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 52627467 - 52627505
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  52627467 tctccaaaagtgacacttaaaaaggaacggaaggagtat 52627505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48214084 - 48214047
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  48214084 tctccaaaagtgacacttaaaaaggaacggagggagta 48214047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13168033 - 13167993
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatta 41  Q
    |||| |||||||||||||||||||||| ||| |||||||||    
T  13168033 tctctaaaagtgacacttaaaaaggaacggagggagtatta 13167993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48152002 - 48151966
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagt 37  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  48152002 tctccaaaagtgacacttaaaaaggaacggagggagt 48151966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 53281996 - 53281952
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaattt 45  Q
    |||||||||||||| |||||||||||| ||| |||||||| ||||    
T  53281996 tctccaaaagtgacccttaaaaaggaacggaaggagtatttattt 53281952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34357195 - 34357150
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaatttg 46  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  34357195 tctccaaaagtgacacttaaaaaggaacggagggagtagtaatttg 34357150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10812216 - 10812176
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatta 41  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  10812216 tctccaaaagtgacacttaaaaaggaacggagggagtatta 10812176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26342597 - 26342558
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatt 40  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  26342597 tctccaaaagtgacacttaaaaaggaacggagggagtatt 26342558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34399219 - 34399181
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  34399219 tctccaaaagtgacacttaaaaaggaacggagggagtat 34399181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14295983 - 14296020
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  14295983 tctccaaaagtgacacttaaaaaggaacggagggagta 14296020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32674228 - 32674191
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  32674228 tctccaaaagtgacacttaaaaaggaacggagggagta 32674191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41885642 - 41885601
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaa 42  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  41885642 tctccaaaagtgacacctaaaaaggaacggagggagtattaa 41885601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17193175 - 17193136
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatt 40  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  17193175 tctccaaaagtgacacttaaaaaggaacggagggagtatt 17193136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 364767 - 364805
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  364767 tctccaaaagtgacacttaaaaaggaacggatcgagtat 364805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3849082 - 3849044
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  3849082 tctccaaaagtgacacttaaaaaggaacggagggagtat 3849044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17835910 - 17835872
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  17835910 tctccaaaagtgacacttaaaaaggaacggagggagtat 17835872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24663396 - 24663358
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  24663396 tctccaaaagtgatacttaaaaaggaacggatggagtat 24663358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9838346 - 9838383
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  9838346 tctccaaaagtgacacttaaaaaggaacggagggagta 9838383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17601364 - 17601401
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  17601364 tctccaaaagtgacacttaaaaaggaatggagggagta 17601401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23923937 - 23923974
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  23923937 tctccaaaagtgacacttaaaaaggaacggagggagta 23923974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18034046 - 18034085
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatt 40  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  18034046 tctcaaaaagtgacacttaaaaaggaacggatggagtatt 18034085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32347995 - 32347953
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaatt 44  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  32347995 tctccaaaagtgacacttaaaaaggaacgga-ggagtattaatt 32347953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1677233 - 1677195
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  1677233 tctccaaaagtgacacttaaaaaggaacggagggagtat 1677195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35531515 - 35531553
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  35531515 tctccaaaagtgacacttaaaaaggaacggagggagtat 35531553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28679038 - 28679001
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagta 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  28679038 tctccaaaagtgacacttaaaaaggaacggagggagta 28679001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1024569 - 1024533
Alignment:
Q  5 caaaagtgacacttaaaaaggaagggatggagtatta 41  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  1024569 caaaagtgacacttaaaaaggaacggaaggagtatta 1024533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 9127682 - 9127654
Alignment:
Q  3 tccaaaagtgacacttaaaaaggaaggga 31  Q
    |||||||||||||||||||||||||||||    
T  9127682 tccaaaagtgacacttaaaaaggaaggga 9127654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 49164 - 49126
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  49164 tctccaaaagtgacacttaaaaaggaactgatggagtat 49126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 184351 - 184389
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtat 39  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  184351 tctccaaaagtgacacttaaaaaggaacggagggagtat 184389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14945 - 14986
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaa 42  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||    
T  14945 tctccgaaagtgacacttaaaaaggaacggagggagtattaa 14986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 138955 - 138995
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtatta 41  Q
    |||| |||||||||||||||||||||| ||| |||||||||    
T  138955 tctctaaaagtgacacttaaaaaggaacggagggagtatta 138995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 419858 - 419901
Alignment:
Q  1 tctccaaaagtgacacttaaaaaggaagggatggagtattaattt 45  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||    
T  419858 tctccaaaagtgacacttaaaaaggaacgga-ggagtataaattt 419901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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