View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_49 (Length: 238)
Name: NF15217_low_49
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27526314 - 27526534
Alignment:
| Q |
1 |
tctctaatgaaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaactactaatgacataaatg |
100 |
Q |
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| T |
27526314 |
tctctaatgaaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaactactaatgacataaatg |
27526413 |
T |
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| Q |
101 |
attcatgggaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatgtaaacaatttgttactaaaattgaacaattgtgtatcct |
200 |
Q |
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| T |
27526414 |
attcatgggaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatttaaacaatttgttactaaaattgaactattgtgtatcct |
27526513 |
T |
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| Q |
201 |
tagctactagctaataaaact |
221 |
Q |
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||||||||||||||||||||| |
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| T |
27526514 |
tagctactagctaataaaact |
27526534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27531967 - 27532100
Alignment:
| Q |
1 |
tctctaatgaaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaactactaatgacataaatg |
100 |
Q |
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|||||||| ||||||| |||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
27531967 |
tctctaatcaaactttctttgtttgttaggggagatatgcatccagctaaatggggtgctaaagtgggaaatagttggagaactactggtgacataactg |
27532066 |
T |
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| Q |
101 |
attcatgggaaaggtaaaaaccatgcactcaatt |
134 |
Q |
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|| ||||||||||||||||||||||||||||||| |
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| T |
27532067 |
atacatgggaaaggtaaaaaccatgcactcaatt |
27532100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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