View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_52 (Length: 227)
Name: NF15217_low_52
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25834981 - 25835202
Alignment:
| Q |
1 |
ttttatggatgtgaattacaaagataaagacaattacacacattctgaaggacttatgaagaagtatgtcaaagaagtccttgttgaaagtgttccaatc |
100 |
Q |
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| T |
25834981 |
ttttatggatgtgaattacaaagataaagacaattacacacattctgaaggacttatgaagaaatatgtcaaagaagtccttgtcgaaagtgttccaatc |
25835080 |
T |
|
| Q |
101 |
taagcatccagttttagtcggtatttagactcacggtgaatttgttaaaatatgacacaccatcgtcatatgaaattcactgttaatccaaacaaaatta |
200 |
Q |
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| T |
25835081 |
taagcatccagttttagtgagtatttagactcacggtgaatttgtcaaaatatgacataccatggtcatatgaaattcactgttaatccaaacaaaatta |
25835180 |
T |
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| Q |
201 |
gtaatgtgtgcatgtcgtgtgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
25835181 |
gtaatgtgtgcatgtcgtgtgt |
25835202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2328747 - 2328807
Alignment:
| Q |
1 |
ttttatggatgtgaattacaaagataaagacaattacacacattctgaaggacttatgaag |
61 |
Q |
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|||||||||||| |||||||||| |||| || ||||||| |||||||||||| |||||| |
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| T |
2328747 |
ttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaag |
2328807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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