View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15217_low_55 (Length: 217)

Name: NF15217_low_55
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15217_low_55
NF15217_low_55
[»] chr5 (1 HSPs)
chr5 (84-169)||(31608522-31608604)
[»] chr2 (2 HSPs)
chr2 (89-169)||(27355643-27355723)
chr2 (89-169)||(45411437-45411517)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 31608522 - 31608604
Alignment:
Q  84 aagcataacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactaga 169  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31608522 aagcataacttctagctaggaacaaac---taataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactaga 31608604  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 27355723 - 27355643
Alignment:
Q  89 taacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactaga 169  Q
    |||||||||||||| ||||||| |||||||||||  || |||||||||||  ||||| |||||  ||||||||||||||||    
T  27355723 taacttctagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactaga 27355643  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 45411437 - 45411517
Alignment:
Q  89 taacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactaga 169  Q
    |||||||||||||| ||||||| |||||||||||  || |||||||||||  ||||| |||||  ||||||||||||||||    
T  45411437 taacttctagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactaga 45411517  T

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