View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_6 (Length: 583)
Name: NF15217_low_6
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 21074196 - 21074530
Alignment:
| Q |
15 |
cagagaccaaggtaaaggataataatacctctattgacattgaagagaagaagaacaataatgaaggtgaaaccgtgagagaacgaagccataatgaatt |
114 |
Q |
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| T |
21074196 |
cagagaccaaggtaaaggataataatacctctattgacattgaagagaagaagaacaataatgaaggtgaaaccgtgagagaaccaagccatattgaatt |
21074295 |
T |
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| Q |
115 |
gaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttag |
214 |
Q |
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| T |
21074296 |
gaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaaga-------------tgaaaccaattagtctttcattttcttatttag |
21074382 |
T |
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| Q |
215 |
gtgatttgaactcattgttctannnnnnnagggtgtttgttccgttcaaaacaattgatttcttttttccaagatatatattatgaatgtgttcacaaac |
314 |
Q |
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| T |
21074383 |
gtgatttgaactcattgttctattttattagggtgtttgttctgttcaaagaaactgatttgtttttt-caagatatatattctgaatctgttcacaaat |
21074481 |
T |
|
| Q |
315 |
ataaactcaat---agagggatatggttatagttttgtctttaagaaca |
360 |
Q |
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| T |
21074482 |
gtaaactcaatggaggagggatatggttacagttatttcttcaagaaca |
21074530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 43 - 233
Target Start/End: Original strand, 21078929 - 21079119
Alignment:
| Q |
43 |
ctctattgacattgaagagaagaagaacaataatgaaggtgaaaccgtgagagaacgaagccataatgaattgaaggcagatagagttgttatgaatttt |
142 |
Q |
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| T |
21078929 |
ctctattgacattgaagaaatgaagaaaaataatgaaggtgaatcagggagagagcagagtcataatgaattgaagtcagaaaaagttgttaggaatttt |
21079028 |
T |
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| Q |
143 |
gatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaactcattgtt |
233 |
Q |
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| T |
21079029 |
gatttgaacgagcttccaacaaatggtgttgcagatgaatgtgttcaactggtctttcattttctaatttaggtgatttgaactcattgtt |
21079119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 21155264 - 21155140
Alignment:
| Q |
106 |
taatgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcatttt |
205 |
Q |
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||||||||||||| || | ||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||| ||| |||||| | |
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| T |
21155264 |
taatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaactgaagatgttgcacatgaatgaaaccaattggtc-ttcattgt |
21155166 |
T |
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| Q |
206 |
cttatttaggtgatttgaactcattg |
231 |
Q |
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| T |
21155165 |
cttatttaggtcatttaaactcattg |
21155140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 21160779 - 21160655
Alignment:
| Q |
109 |
tgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttctt |
208 |
Q |
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|||||||||| || | ||||||||||||||||||||||||||||| |||||| |||||||| ||||||| | ||||||||| |||||||||| |||| |
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| T |
21160779 |
tgaattgaagccaaaaggagttgttatgaattttgatttgaatgagtttccaacagaagatgtttcagatgaataaaaccaattggtctttcattgtctt |
21160680 |
T |
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| Q |
209 |
atttaggtgatttgaactcattgtt |
233 |
Q |
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|||||| |||||||||||||||| |
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| T |
21160679 |
ggttaggtcatttgaactcattgtt |
21160655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 27738872 - 27738762
Alignment:
| Q |
126 |
gagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaac |
225 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||| |||||||| || |||| ||||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
27738872 |
gagttgttatgaattttgatttgaatgcgcttccaatagaagatgtttcacatgaatgaaaccaattggtctttcattgtcttatttaggtcatttgaac |
27738773 |
T |
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| Q |
226 |
tcattgttcta |
236 |
Q |
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||||||||||| |
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| T |
27738772 |
tcattgttcta |
27738762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 27731857 - 27731727
Alignment:
| Q |
106 |
taatgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcatttt |
205 |
Q |
| |
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||||||||||||| || | ||||||||||||||||||||||||||||| |||||| | ||||| ||| |||| ||||||||||||||||||||| | |
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| T |
27731857 |
taatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacatgaatgaaaccaattagtctttcatcgt |
27731758 |
T |
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| Q |
206 |
cttatttaggtgatttgaactcattgttcta |
236 |
Q |
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||||||||||| |||| |||||||||||||| |
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| T |
27731757 |
cttatttaggtcattttaactcattgttcta |
27731727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 21249714 - 21249823
Alignment:
| Q |
126 |
gagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaac |
225 |
Q |
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||||||||||||||||||||||||||||| ||| || ||||||||||| |||| ||||||||||| || ||||||| | |||||||||| |||||||| |
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| T |
21249714 |
gagttgttatgaattttgatttgaatgagcttcaaacagaagatgttgcacatgaatgaaaccaattggtttttcattgtattatttaggtcatttgaac |
21249813 |
T |
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| Q |
226 |
tcattgttct |
235 |
Q |
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| |||||||| |
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| T |
21249814 |
taattgttct |
21249823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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