View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15217_low_8 (Length: 540)
Name: NF15217_low_8
Description: NF15217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15217_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 8939587 - 8939336
Alignment:
| Q |
14 |
atcatcttcacgcaactctctaatctttcgtcctctttcatttcgtcctccacttttcagaattcgttcgtctttgttacaagataaagaagataaagtt |
113 |
Q |
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| T |
8939587 |
atcatcttcacgaaactctctaatctttcgtcctctttcatttcgtcctccacttttcagaattcgttcgtctttgttacaagataaagaagataaagtt |
8939488 |
T |
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| Q |
114 |
attacacaaaacacttttccttttaaaacctctcctttagattccgttactgaaaattcaactaatgacgatgatacttcatctactagtgcttgggaaa |
213 |
Q |
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| T |
8939487 |
attacacaaaacacttttccttctaaaacctctcctttagattccgttactgaaaattcaactaatgacgatgatacttcatctactagtgcttgggaaa |
8939388 |
T |
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| Q |
214 |
aaggggttattaaagttgaacaatccgttaatatttttctcacggtaaatta |
265 |
Q |
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| T |
8939387 |
aaggggttattaaagttgaacaatccgttaatatttttctcacggtaaatta |
8939336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 329 - 525
Target Start/End: Complemental strand, 8939270 - 8939074
Alignment:
| Q |
329 |
ctcattttcagcttcaattgttgattttcaggactctgtcataaagatacttgatgctttgtaccgtgatagaaattatgcaaggttttttgtgcttgaa |
428 |
Q |
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| T |
8939270 |
ctcattttcagcttcaattgttgattttcaggactctgtcataaagatacttgatgctttgtaccgtgatagaaattatgcaaggttttttgtgcttgaa |
8939171 |
T |
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| Q |
429 |
actatagcaagagtcccttattttggtaagttctattttctaaatcatgcttacgcctttcaaatattaatctgttaaactctgtgtagaattgtat |
525 |
Q |
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| T |
8939170 |
actatagcaagagtcccttattttggtaagttctattttctatatcatgcttacgcctttcaaatatccatctgttaaactctgtgtagaattgtat |
8939074 |
T |
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