View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15218_high_2 (Length: 380)
Name: NF15218_high_2
Description: NF15218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15218_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 39293582 - 39293942
Alignment:
| Q |
18 |
ataatacatgtcaaacgtcgtataatttgagaggaatgaagtaaaagattttaaggactggaacagagaaattgttgtgctgttagaaagagtcatag-g |
116 |
Q |
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| T |
39293582 |
ataatacatgtcaaacgtcatataatttgtgaggaatgaagtaaaagattttaaggactagaacagagaaattgttgtgctgttagaaagagtcatagtg |
39293681 |
T |
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| Q |
117 |
agacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaaggattatacgtactcatatctttattatatcgatcta |
216 |
Q |
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| T |
39293682 |
agacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaaggattatacgtactcatatctttattatatcgatcta |
39293781 |
T |
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| Q |
217 |
tttctcttttgact---gactgagtcatatatagctgcctaaacgtgttattttgattcctatttaaacgtaagagtttgtacattacttgttaatgaat |
313 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39293782 |
tttctcttttgactcatgactgagtcatatatagctgcctaaacgtgttattttgattcctatttaaacgttagagtttgtacattacttgttaatgaat |
39293881 |
T |
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| Q |
314 |
ccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatc |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293882 |
ccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatc |
39293942 |
T |
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