View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15218_low_6 (Length: 235)
Name: NF15218_low_6
Description: NF15218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15218_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 48306690 - 48306760
Alignment:
| Q |
98 |
tatagcagatacatgagcatatcaacattttgtgcaccagaatctaatgtccaaccccttcagatagatacaa |
170 |
Q |
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| T |
48306690 |
tatagcagatacatgagcat--cagcattttgtgcaccagaatctaatgtccaaccccttcagatagatacaa |
48306760 |
T |
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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 48295957 - 48296010
Alignment:
| Q |
166 |
tacaacgtaaaggttattcatttcaagaaagcacacaaaatctggtgttgatac |
219 |
Q |
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| T |
48295957 |
tacaacgtaaaggttattcatttcaagaaagcacacaaaatctggtgttgatac |
48296010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 48307272 - 48307325
Alignment:
| Q |
166 |
tacaacgtaaaggttattcatttcaagaaagcacacaaaatctggtgttgatac |
219 |
Q |
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| T |
48307272 |
tacaacgtaaaggttattcatttcaagaaagcacacaaaatctggtgttgatac |
48307325 |
T |
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