View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15219_low_2 (Length: 427)
Name: NF15219_low_2
Description: NF15219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15219_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 40634257 - 40634670
Alignment:
| Q |
1 |
catgtcttgaagatggcacatgaccgcttcttcaccatagccattggctgcgccatttgtcttttcatgagtcttttagtatttccaaattggtcagggg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40634257 |
catgtcttgaagatggcacatgaccgcttcttcaccatagccattggctgcgccatttgtcttttcatgagtcttttagtatttccaaattggtcagggg |
40634356 |
T |
|
| Q |
101 |
aagaccttcatcattccacagctttcaaacttgaaggccttgccaaatctatagaaggtatgccaaattcataacacatgcatagtatcaaaggttttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40634357 |
aagaccttcatcattccacagctttcaaacttgaaggccttgccaaatctatagaaggtatgccaaattcataacacatgcatagtatcaaaggttttat |
40634456 |
T |
|
| Q |
201 |
tactttgcatattaacaatttattgtatggtgtgaaatattgcagcttgtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40634457 |
tactttgcatattaacaatttattgtatggtgtgaaatattgcagcttgtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatc |
40634556 |
T |
|
| Q |
301 |
atctgaaggtccaatatacaaaggttataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgttttgattcattcaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40634557 |
atctgaaggtccaatatacaaaggttataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgttttgattcattcaaa |
40634656 |
T |
|
| Q |
401 |
atcatgctaagtat |
414 |
Q |
| |
|
|||||||||||||| |
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|
| T |
40634657 |
atcatgctaagtat |
40634670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 2 - 414
Target Start/End: Original strand, 40645865 - 40646270
Alignment:
| Q |
2 |
atgtcttgaagatggcacatgaccgcttcttcaccatagccattggctgcgccatttgtcttttcatgagtcttttagtatttccaaattggtcagggga |
101 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40645865 |
atgtcgtgaagatggcacgtgaccgcttctataccatagccattggctgtgccatttgccttttcatgagtcttttagtatttccaaattggtccgggga |
40645964 |
T |
|
| Q |
102 |
agaccttcatcattccacagctttcaaacttgaaggccttgccaaatctatagaaggtatgccaaattcataacacatgcatagtatcaaaggttttatt |
201 |
Q |
| |
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||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||| || || | ||||||| ||||||||||||||| |
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| T |
40645965 |
agatctacgtcattccacagctttcaaacttgaaggcctagccaaatctatagaaggtatgtaaagtttacaacacat----agtatcaaaggttttg-- |
40646058 |
T |
|
| Q |
202 |
actttgcatattaacaatttattgtatggtgtgaaatattgcagcttgtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatca |
301 |
Q |
| |
|
||||| || ||||| ||||||||| |||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40646059 |
-ctttgtatgataacattttattgtacggtgtgaattcgtgcagcttgtgtcggtgaatattttaatggagaaattgaagtttctggtgatataaaatca |
40646157 |
T |
|
| Q |
302 |
tctgaaggtccaatatacaaaggttataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgttttgattcattcaaaa |
401 |
Q |
| |
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| ||| | | ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
40646158 |
tgtgatgattcaatatacaaaggttataaagcagttttggattcaaaatccactgatgaaacattggtaagctattcatcttgttttgattcattctaaa |
40646257 |
T |
|
| Q |
402 |
tcatgctaagtat |
414 |
Q |
| |
|
|||||| ||||| |
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|
| T |
40646258 |
acatgctgagtat |
40646270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 369
Target Start/End: Complemental strand, 4781217 - 4781083
Alignment:
| Q |
235 |
aaatattgcagcttgtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatcatctgaaggtccaatatacaaaggttataaggct |
334 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| | || || | ||||||||||| | ||| |||||||||||||| ||| | |
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|
| T |
4781217 |
aaatcttgcagcttgtgtcaatgaatatttttatggagaaattgatagccccggagaaaacaaatcatctgaggatcccatatacaaaggttacaagaat |
4781118 |
T |
|
| Q |
335 |
gttttggattcaaaatccacagatgaaacattggt |
369 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| |
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|
| T |
4781117 |
gttttggattcaaaatccattgatgaaacactggt |
4781083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 4781586 - 4781499
Alignment:
| Q |
82 |
tttccaaattggtcaggggaagaccttcatcattccacagctttcaaacttgaaggccttgccaaatctatagaaggtatgccaaatt |
169 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||| || |||||||| |||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
4781586 |
tttccaaattggtcaggagaagacctacataattctactgctttcaagcttgaaggtcttgccaaatctatagagggtatgcaaaatt |
4781499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 31134395 - 31134465
Alignment:
| Q |
327 |
ataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgttttgattcattc |
397 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| || |||||||| ||||||| ||||| ||||||| |
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|
| T |
31134395 |
ataagactgttttggattcaaagaccacagatgaaacctttgtaagctatcaatcttattttgtttcattc |
31134465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 51821356 - 51821460
Alignment:
| Q |
56 |
tttgtcttttcatgagtcttttagtatttccaaattggtcaggggaagaccttcatcattccacagctttcaaacttgaaggccttgccaaatctataga |
155 |
Q |
| |
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|||||||| | |||||||| || |||||||| |||||||||||||||||||||||| | ||||| | |||||||||||| | ||||| ||| |||| |
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| T |
51821356 |
tttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcaaaacttgaaggcttagccaactctgtaga |
51821455 |
T |
|
| Q |
156 |
aggta |
160 |
Q |
| |
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||||| |
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|
| T |
51821456 |
aggta |
51821460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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