View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15219_low_4 (Length: 255)
Name: NF15219_low_4
Description: NF15219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15219_low_4 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0505 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 25262808 - 25262634
Alignment:
| Q |
81 |
gttttaaacttgacacctaaaacaatttatcataaagtctaatgaaataaatcatagatactttaggcatccgagaatccgaaaccaaataatgataaca |
180 |
Q |
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| T |
25262808 |
gttttaaacttgacacctaaaacaatttatcataaaggctgatgaaataaatcatagatactttaggcatctgagaatccgaaaccaaataatgataaca |
25262709 |
T |
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| Q |
181 |
ctattgaaccattttctaactaattcactcttatgatattctagttttaaagggcatctatgacatgattccata |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25262708 |
gtattgaaccattttctaactaattcactcttatgatatcctagttttaaagggcatctatgacatgattccata |
25262634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0505 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0505
Description:
Target: scaffold0505; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 81 - 255
Target Start/End: Original strand, 4084 - 4258
Alignment:
| Q |
81 |
gttttaaacttgacacctaaaacaatttatcataaagtctaatgaaataaatcatagatactttaggcatccgagaatccgaaaccaaataatgataaca |
180 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4084 |
gttttaaacttgacacctaaaacaatttatcataaaggctgatgaaataaatcatagatactttaggcatgtgagaatccgaaaccaaataatgataaca |
4183 |
T |
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| Q |
181 |
ctattgaaccattttctaactaattcactcttatgatattctagttttaaagggcatctatgacatgattccata |
255 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4184 |
ctattgaaacattttctaactaattcactcttatgatatcctagttttaaagggcatctatgacatgattccata |
4258 |
T |
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