View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1521_low_1 (Length: 443)
Name: NF1521_low_1
Description: NF1521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1521_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 428
Target Start/End: Original strand, 19930089 - 19930495
Alignment:
| Q |
9 |
gagatgaagagacatgaactaatccttgcttagatattttactcttatgatatataaccttcatttattgaatttttgtttgatttattctaggtgtaat |
108 |
Q |
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| T |
19930089 |
gagatgaagagacatgaactaatctttgctaagatattttactcttatgatatataaccttcatttattgagtttttgtttgattaattctaggtgtaat |
19930188 |
T |
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| Q |
109 |
tcagcttagtaattgaatgctggtttggtattttttctgcgtttgttatttgttaa-ttattgcatttcgttttgtatacataacaatccattgcatact |
207 |
Q |
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| T |
19930189 |
tcaacttagtaattgaatgctggtttggtattttttctgcgtttattatttactaaattatggcattctgttttgtactagt---------ttgcac--- |
19930276 |
T |
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| Q |
208 |
agtttgcacttggctattgctagcatttatagcttgtgtgactaataatagtgcttatagtagcaagagaagacatatacatataagacattgttactta |
307 |
Q |
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| T |
19930277 |
--tttgctattgtctattgctagtatttatagcttgtgtgactaataatagtgcttatagtagccagagaagacatattcatataagacattgttactta |
19930374 |
T |
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| Q |
308 |
actgaaattggtattatctggcttgagtatgtgaaaactgagagaaatcatacagatcctttaacaaaaggattgtccttgagacgtcgaggtccgtgaa |
407 |
Q |
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| T |
19930375 |
actgaaattggtattatctggcttgagtatgtgaaaaatgagagaaatcatacagatcctttaacaaaaggattgtccttgagacgtcgaggtccgtgaa |
19930474 |
T |
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| Q |
408 |
tggaggaaagtatggtggaga |
428 |
Q |
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| T |
19930475 |
tggaggaaagtatggtggaga |
19930495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 47604216 - 47604150
Alignment:
| Q |
241 |
ttgtgtgactaataatagtgcttatagtagcaagagaag---acatatacatataagacattgttac |
304 |
Q |
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| T |
47604216 |
ttgtgtgactaataatagtgcttaaagtggcaagagaagaacacatatacgtatgagacagtgttac |
47604150 |
T |
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