View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1521_low_2_N (Length: 367)

Name: NF1521_low_2_N
Description: NF1521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1521_low_2_N
NF1521_low_2_N
[»] scaffold0248 (1 HSPs)
scaffold0248 (29-354)||(16284-16608)
[»] chr8 (4 HSPs)
chr8 (193-302)||(10734986-10735095)
chr8 (29-117)||(15007208-15007296)
chr8 (29-91)||(36911894-36911956)
chr8 (29-92)||(10739168-10739231)
[»] chr1 (3 HSPs)
chr1 (29-117)||(29530264-29530352)
chr1 (47-116)||(26023622-26023691)
chr1 (34-91)||(29547924-29547983)
[»] chr6 (1 HSPs)
chr6 (31-91)||(23599900-23599960)
[»] chr4 (9 HSPs)
chr4 (29-111)||(54687605-54687687)
chr4 (33-117)||(26992170-26992254)
chr4 (32-74)||(14000206-14000248)
chr4 (33-111)||(22746702-22746779)
chr4 (29-71)||(26997360-26997402)
chr4 (34-91)||(6408211-6408268)
chr4 (29-70)||(54678526-54678567)
chr4 (39-91)||(6408124-6408176)
chr4 (33-85)||(12746495-12746547)
[»] chr7 (3 HSPs)
chr7 (29-74)||(33190285-33190330)
chr7 (29-74)||(39865584-39865629)
chr7 (51-100)||(7280254-7280303)
[»] chr3 (3 HSPs)
chr3 (32-117)||(13921733-13921818)
chr3 (33-117)||(44126650-44126734)
chr3 (32-100)||(12988222-12988290)
[»] chr5 (4 HSPs)
chr5 (39-117)||(16633183-16633261)
chr5 (29-74)||(19779937-19779982)
chr5 (39-100)||(25214345-25214406)
chr5 (39-100)||(25278495-25278556)


Alignment Details
Target: scaffold0248 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 29 - 354
Target Start/End: Original strand, 16284 - 16608
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctctatcaatgggatgatgct 128  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||||| ||||||| || || ||||||||||  |||||||||||||  |||||||||    
T  16284 agtgcttttatatttttcttcctcttcttctttgatcttatgctttgagtttatttcata-cacgttatcagtatgaagctctatcaatcagatgatgct 16382  T
Q  129 tgggtagtggtggtgaacctttgatttaaagtgaaagtcaaataaattgcagacattataccacatatatgcttcatccaggttaactattccaccttac 228  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  16383 tgggtagtggtgttgaacctttgatttaaagtgaaagtcaaataaattgcagacattataccatacatatgcttcatccaggttaactattccaccttac 16482  T
Q  229 tttttggttatatatttgggtgaaatttatgcatgttatgaatttgtgcaaatggtatcttgatatttgatttgattggtattatactatagctcttgtg 328  Q
    || ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  16483 ttcttggttatatatttgggtgaaatttatacctgttatgaatttgtgcaaatgatatcttgatatttgatttgatcggtattatactatacctcttgtg 16582  T
Q  329 aagttgttcttaatatattatcattt 354  Q
    ||||||||||||||||||||||||||    
T  16583 aagttgttcttaatatattatcattt 16608  T

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Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 193 - 302
Target Start/End: Original strand, 10734986 - 10735095
Alignment:
Q  193 atatatgcttcatccaggttaactattccaccttactttttggttatatatttgggtgaaatttatgcatgttatgaatttgtgcaaatggtatcttgat 292  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10734986 atatatgcttcatccagattatctattccaccttactttttggttatatatttgggtgaaatttatgcatgttatgaatttgtgcaaatggtatattgat 10735085  T
Q  293 atttgatttg 302  Q
    |||| |||||    
T  10735086 atttaatttg 10735095  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 15007208 - 15007296
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctctatcaat 117  Q
    |||||||||||||| | ||||||| |||||||||||| |||||||| |  ||||||| ||||| ||| |||| || |||||||||||||    
T  15007208 agtgctttcatcttctccttcctcatcttctttgatcctgtgcttttactttatttcataacacgttctcagcacgaagctctatcaat 15007296  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 36911956 - 36911894
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaaca 91  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||| || ||||||| |||||    
T  36911956 agtgttttcaccttcttcttcctcttcttctttgatcttgtgcttttagtttatttcataaca 36911894  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 10739168 - 10739231
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacat 92  Q
    |||||||||||||| | | | ||||||||||||||||||||||||| |  ||||||| ||||||    
T  10739168 agtgctttcatcttctccattctcttcttctttgatcttgtgcttttactttatttcttaacat 10739231  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 29530264 - 29530352
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctctatcaat 117  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||| || ||||||| | |||||||||||| || |||||||| ||||    
T  29530264 agtgttttcatctccttcttcctcttcttctttgatcttgtgcttttagtttatttcattacatgttatcagcacgaagctctaacaat 29530352  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 26023622 - 26023691
Alignment:
Q  47 ttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctctatcaa 116  Q
    |||||| ||||||||||||||||||||| |  ||||||| ||||| |||||||| || ||||||||||||    
T  26023622 ttcctcatcttctttgatcttgtgcttttactttatttcttaacacgttatcagcactaagctctatcaa 26023691  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 29547924 - 29547983
Alignment:
Q  34 tttcatctttttcttcc--tcttcttctttgatcttgtgctttgagattatttcgtaaca 91  Q
    ||||||||| |||||||  ||||||||||| |||||||||||| || ||||||| |||||    
T  29547924 tttcatcttcttcttccgatcttcttctttaatcttgtgcttttagtttatttcataaca 29547983  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 23599960 - 23599900
Alignment:
Q  31 tgctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaaca 91  Q
    |||||||||||| |||||| |||||||||||||||||||||||| || ||||||| |||||    
T  23599960 tgctttcatcttcttcttcatcttcttctttgatcttgtgcttttagtttatttcttaaca 23599900  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 54687687 - 54687605
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctct 111  Q
    |||| ||||||||| | ||||||||||||||||||| ||||||||| |  ||||||| ||||| |||||||| || |||||||    
T  54687687 agtgatttcatcttctccttcctcttcttctttgattttgtgcttttactttatttcttaacacgttatcagcacgaagctct 54687605  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 26992170 - 26992254
Alignment:
Q  33 ctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctctatcaat 117  Q
    |||||||||| |  ||||||||||||||||||||||||| || |  ||||||| ||||| |||||||| |  |||||||| ||||    
T  26992170 ctttcatcttctctttcctcttcttctttgatcttgtgcatttactttatttcttaacacgttatcagcatgaagctctaacaat 26992254  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 14000206 - 14000248
Alignment:
Q  32 gctttcatctttttcttcctcttcttctttgatcttgtgcttt 74  Q
    ||||||||| | |||||||||||||||||||||||||| ||||    
T  14000206 gctttcatcatcttcttcctcttcttctttgatcttgttcttt 14000248  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 22746702 - 22746779
Alignment:
Q  33 ctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctct 111  Q
    |||||||||| ||| ||||| |||||||||||||| || |||  | ||||||| ||||| ||||||||||| |||||||    
T  22746702 ctttcatcttcttcctcctcgtcttctttgatcttatg-tttttgtttatttcttaacacgttatcagtacgaagctct 22746779  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 26997360 - 26997402
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgc 71  Q
    |||||||||||||| | ||| ||||||||||||||||||||||    
T  26997360 agtgctttcatcttctcctttctcttcttctttgatcttgtgc 26997402  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 6408211 - 6408268
Alignment:
Q  34 tttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaaca 91  Q
    ||||||| | |||||| |||||||| ||||||||||||||| || ||||||| |||||    
T  6408211 tttcatcatcttcttcttcttcttcattgatcttgtgcttttagtttatttcataaca 6408268  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 54678567 - 54678526
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtg 70  Q
    |||| ||||||||| | |||||||||||||||||||||||||    
T  54678567 agtgttttcatcttctccttcctcttcttctttgatcttgtg 54678526  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 6408124 - 6408176
Alignment:
Q  39 tctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaaca 91  Q
    |||| |||||| |||||||||| ||||||||||||| || ||||||| |||||    
T  6408124 tcttcttcttcttcttcttcttcgatcttgtgctttaagtttatttcataaca 6408176  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 12746547 - 12746495
Alignment:
Q  33 ctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttc 85  Q
    |||||||||| ||| |||||||||||||| |||||||| ||| || |||||||    
T  12746547 ctttcatcttcttcctcctcttcttctttaatcttgtgtttttagtttatttc 12746495  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 33190330 - 33190285
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgcttt 74  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  33190330 agtgctttcatcttctccttcctcttcttctttgatcttgtgcttt 33190285  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 39865584 - 39865629
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgcttt 74  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  39865584 agtgctttcatcttctccttcctcttcttctttgatcttgtgcttt 39865629  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 7280254 - 7280303
Alignment:
Q  51 tcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcag 100  Q
    ||||||||||||||||||| |||| || ||||||| ||||||||||||||    
T  7280254 tcttcttctttgatcttgtacttttagtttatttcataacatgttatcag 7280303  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 13921733 - 13921818
Alignment:
Q  32 gctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctctatcaat 117  Q
    ||||||||| | |||||||||||||||||||||||||| ||||  | ||||||  ||||| |||||||| || |||||||| ||||    
T  13921733 gctttcatcatcttcttcctcttcttctttgatcttgttctttatgtttattttataacacgttatcagcacgaagctctaacaat 13921818  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 44126734 - 44126650
Alignment:
Q  33 ctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctctatcaat 117  Q
    |||||||||| ||||| |||||||| ||||||||| |||||| |  ||||||| |||||||||||||  || |||||| ||||||    
T  44126734 ctttcatcttcttctttctcttcttatttgatcttatgcttttaatttatttcttaacatgttatcaacacgaagctcgatcaat 44126650  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 12988222 - 12988290
Alignment:
Q  32 gctttcatctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcag 100  Q
    |||||||| ||| ||||  ||||||||||||||||||| |||| || |||||| ||||||  |||||||    
T  12988222 gctttcatttttatctttttcttcttctttgatcttgtacttttagtttattttgtaacacattatcag 12988290  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 16633261 - 16633183
Alignment:
Q  39 tctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcagtacaaagctctatcaat 117  Q
    |||| |||||| |||||||||| ||||||||||||| || ||||||  ||||| |||||||| || |||||||| ||||    
T  16633261 tcttcttcttcttcttcttcttcgatcttgtgcttttagtttattttataacacgttatcagcacgaagctctaacaat 16633183  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 19779982 - 19779937
Alignment:
Q  29 agtgctttcatctttttcttcctcttcttctttgatcttgtgcttt 74  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||||    
T  19779982 agtgcttttatcttctcattcctcttcttctttgatcttgtgcttt 19779937  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 25214406 - 25214345
Alignment:
Q  39 tctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcag 100  Q
    |||| |||||| || ||||||||||||| ||||||| || ||||||| ||||| ||||||||    
T  25214406 tcttcttcttcttcctcttctttgatctagtgcttttagtttatttcataacacgttatcag 25214345  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 25278556 - 25278495
Alignment:
Q  39 tctttttcttcctcttcttctttgatcttgtgctttgagattatttcgtaacatgttatcag 100  Q
    |||| |||||| || ||||||||||||| ||||||| || ||||||| ||||| ||||||||    
T  25278556 tcttcttcttcttcctcttctttgatctagtgcttttagtttatttcataacacgttatcag 25278495  T

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