View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1521_low_3_N (Length: 338)
Name: NF1521_low_3_N
Description: NF1521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1521_low_3_N |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 40785664 - 40785327
Alignment:
| Q |
1 |
ccggcttcagctccaagtgcaatgataaggatgttaaagattaagtaaaggtaagtaggcctgagagaggaaggtaataagggtgtgatcacaaggagaa |
100 |
Q |
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| T |
40785664 |
ccggcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaacaagggtgtgatcacaaggagaa |
40785565 |
T |
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| Q |
101 |
gaagtaagatagagagaactataacttgagatttattaactttgttcatggtcatcttgataatagagaaagataaagggaattagacttagtggtatag |
200 |
Q |
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| T |
40785564 |
gaagtaagatagagagaactataacttgagatttattaactttgttcatggtcatcttgataatagagaaagataaagggaattagacttagtggtatag |
40785465 |
T |
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| Q |
201 |
gaaaaagtagtaggaagaataaaagcatgagaatgagtgtaggtttctagacatatatatagatgacataagggtagatggaagtgagagagttagtgag |
300 |
Q |
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| T |
40785464 |
gaaaaagtagtaggaagaataaaagcatgagaatgagtgtaggtttctagacatatatatagatgacataaaggtgggtggaagtgagagagttagagag |
40785365 |
T |
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| Q |
301 |
acatatagtggaaattgttggttacatcattgttgttt |
338 |
Q |
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| T |
40785364 |
acagatagtggaaattgttggttacatcattgttgttt |
40785327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 40793416 - 40793265
Alignment:
| Q |
4 |
gcttcagctccaagtgcaatgataaggatgttaaagattaagtaaaggtaagtaggcctgagagaggaaggtaataagggtgtgatcacaaggagaagaa |
103 |
Q |
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| T |
40793416 |
gcttcagctccaagtgcaatgataaggaggttgaagattaagtaaaggtaactgggcctaagaaaagaaggtaagaagggtgtgatcacaaggagaaaag |
40793317 |
T |
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| Q |
104 |
gtaagatagagagaactataacttgagatttattaactttgttcatggtcat |
155 |
Q |
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| T |
40793316 |
ctaggaaagagagaactattacttgagatttatcaactttgttcatggtcat |
40793265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 40793183 - 40793050
Alignment:
| Q |
202 |
aaaaagtagtaggaagaataaaagcatgagaatgagtgtaggtttctagacat-atatatagatgacataagggtagatggaagtgagagagt--tagtg |
298 |
Q |
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| T |
40793183 |
aaaaagtagtaggaagaa--aaagcatgggattgagtgtggtgttctagacattatatatagaggacataaaggtggaaagagatcagagagaagtagag |
40793086 |
T |
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| Q |
299 |
agacatatagtggaaattgttggttacatcattgtt |
334 |
Q |
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| T |
40793085 |
agacaaatagtggaatttgttggttacatcattgtt |
40793050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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