View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1521_low_4 (Length: 332)
Name: NF1521_low_4
Description: NF1521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1521_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 45220924 - 45220633
Alignment:
| Q |
1 |
acgttttttatttgctgaggaaatgagttgtttattagtaaaataaaattctgtgcgtacgcaataacatagaatatcaacatcaatgtaccataccctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45220924 |
acgttttttatttgctgaggaaatgagttgtttattagtaaaataaaattctgtgcgtacgcaataacatagaatatcaacatcaatgtaccataccctc |
45220825 |
T |
|
| Q |
101 |
cattaacatagccctttttcttgtcacgcaaagaattcgtcacattcattcactcattcatcttccatctccatnnnnnnnnnnnnnnnnnnnntcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45220824 |
cattaacatagccctttttcttgtcacgcaaagaattcatcacattcattcactcattcatcttccatctccat--cacacacacacacacacatcattt |
45220727 |
T |
|
| Q |
201 |
tccttttccacccaaccgtacttcccgcactttcccaatttcactcgatccatccactcttcataattaacctcttcaatacaattcaactcaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45220726 |
tccttttccacccaaccgtacttcccgcactttcccaatttcactcgatccatccactcttcataattaacctcttcaattcaattcaactcaa |
45220633 |
T |
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