View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1521_low_6 (Length: 320)
Name: NF1521_low_6
Description: NF1521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1521_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 42518308 - 42518446
Alignment:
| Q |
84 |
caacaatatagaccaagggtgtttgatggctttagaggcttgacttgctgcaactaaatcgttaaactcatcatcaacatctgaagttccccgaatctta |
183 |
Q |
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| T |
42518308 |
caacaaaatagaccaagggtgtttgatggctttagaggcttgacttgctgcaagtaaatcgttaaactcatcatcaacatctgaagttccccgaatctta |
42518407 |
T |
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| Q |
184 |
atcaactcctttttagctttgtcatctagacctctttca |
222 |
Q |
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| T |
42518408 |
atcaactcctttttagctttgtcatctagacctctttca |
42518446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 1239998 - 1240124
Alignment:
| Q |
96 |
ccaagggtgtttgatggctttagaggcttgacttgctgcaactaaatcgttaaactcatcatcaacatctgaagttccccgaatcttaatcaactccttt |
195 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
1239998 |
ccaagggtatttgatggctttagaggcttgacttgctgcaagtaaatcgttaaactcatcatcaacatctgatgtcccccgaatcttaatcaactccttt |
1240097 |
T |
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| Q |
196 |
ttagctttgtcatctagacctctttca |
222 |
Q |
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||||||||||||||| ||||||||||| |
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| T |
1240098 |
ttagctttgtcatcttgacctctttca |
1240124 |
T |
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