View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1521_low_8 (Length: 271)
Name: NF1521_low_8
Description: NF1521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1521_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 35909128 - 35908969
Alignment:
| Q |
57 |
tcctagttcaccatcaaattaattggttctaagcatgatccatgttt-------acttccatgaaatgaatgcactttgttcaaagtctactagttagat |
149 |
Q |
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| T |
35909128 |
tcctagttcaccatcaaattaattggttctaagcatgatccttgtttcaaatttacttccatgaaataaatgcactttgtgcaaaatctactagttagat |
35909029 |
T |
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| Q |
150 |
tgtaataataaaagaattagtttgaactttcaattaaaaagttttgtttcatgtcaactgat |
211 |
Q |
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| T |
35909028 |
tgtaat-attaaagaattagtttgaactttcactt-aaaagttttgttacatgtcaactgat |
35908969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 35913529 - 35913374
Alignment:
| Q |
53 |
tgcctcctagttcaccatcaaattaattggttctaagcatgatccatgttt-------acttccatgaaatgaatgcactttgttcaaagtctactagtt |
145 |
Q |
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| T |
35913529 |
tgcctcctgcttcaccatcaaattaaagggttctgagcatgatcaatgtttcaaatttacttccttgaaatg----cactctgtgcataatctactagtt |
35913434 |
T |
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| Q |
146 |
agattgtaataataaaagaattagtttgaactttcaattaaaaagttttgtttcatgtcaa |
206 |
Q |
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| T |
35913433 |
agattgtaataaaaaaaaaattagtttgaactttcaattaaaga-ttttgttacatgtcaa |
35913374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 35926430 - 35926362
Alignment:
| Q |
118 |
aatgcactttgttcaaagtctactagttagattgtaataataaaagaattagtttgaactttcaattaaa |
187 |
Q |
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| T |
35926430 |
aatgcactttgtgcaaaatctactagttagattgtaataa-acaaaattcagtttgaactttcaactaaa |
35926362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 21285257 - 21285317
Alignment:
| Q |
143 |
gttagattgtaataataaaagaattagtttgaactttcaattaaaaagttttgtttcatgt |
203 |
Q |
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| T |
21285257 |
gttagattgtaataataaaagaattagtttgaactttcaattaaaaagttttattacatgt |
21285317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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