View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15221_high_1 (Length: 215)
Name: NF15221_high_1
Description: NF15221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15221_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 5463876 - 5463688
Alignment:
| Q |
21 |
ccaaaaatataatatataacataagaagccactaactaactaacacacatgattccaacctataattaaaagttaaatggtatcttcaacttgcttctct |
120 |
Q |
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| T |
5463876 |
ccaaaaacataatatataacataagaagccactaactaactaacacacatgattccaacctataattaaaagttaaatggtatcttcatcttgcttctct |
5463777 |
T |
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| Q |
121 |
tgtttttcttcatcttcctcttggtgg------tcttcttccgacttgatggtcccatatgagtagccgcagcctccaactgttgtttt |
203 |
Q |
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| T |
5463776 |
tgtttttcttcatcttcctcttggtggtctcattcttcttccgacttgatggtcccatatgagtagccgcagcctccaactgttgtttt |
5463688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 4524659 - 4524698
Alignment:
| Q |
54 |
aactaactaacacacatgattccaacctataattaaaagt |
93 |
Q |
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| T |
4524659 |
aactcactaacacacatgattccaacctataattgaaagt |
4524698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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