View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15222_high_1 (Length: 627)
Name: NF15222_high_1
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 13 - 612
Target Start/End: Original strand, 8070451 - 8071050
Alignment:
| Q |
13 |
attatactaggaatttgaattcaaggaaattgatgaagtattgaaatattatccacaaggacatcatggtgtagataaagaaggacgacctgtgtatata |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8070451 |
attatactaggaatttgaattcaaggaaattgatgaagtattgaaatattatccacaaggacatcatggtgtagataaagaaggacggcctgtgtatata |
8070550 |
T |
|
| Q |
113 |
gaaagattaggacaagtcgatgcgaccaagatgatgcaagtcacaaccatggatcgctatatcaaataccatgtaaaggagtttgagaggacattcgatg |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8070551 |
gaaagattaggacaagtcgatgcgaccaagatgatgcaagtcacaaccatggatcgctatatcaaataccatgtaaaggagtttgagaggacattcgatg |
8070650 |
T |
|
| Q |
213 |
taaagtttgcggcttgttccattgctgccaagaagcacatcgatcaaagtacgactatcctggatgtggagggagtggtatgcataaaaatagttaacag |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8070651 |
taaagtttgcggcttgttccattgctgccaagaagcacatcgatcaaagtacgactatcctggatgtggagggagtggtatgcataaaaatagttaacag |
8070750 |
T |
|
| Q |
313 |
ctagttaattatatttaacatgaaaatttttatgcaacttgagataaatattgtttcaatgtcacaggggcttaaaagcttcagcaaacatgctagggaa |
412 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8070751 |
ttagttaattatatttaacatgaaattttttatgcaacttgagataaatattgtttcaatgtcacaggggcttaaaagcttcagcaaacatgctagggaa |
8070850 |
T |
|
| Q |
413 |
cttgttactcgcattcagaaggttgacggtgacaactatccagaggtattattatttatctacttttggttagaattatgggggaaaagttttgttgtga |
512 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8070851 |
cttgttactcgcattcagaaggttgatggtgacaactatccagaggtattattatttatctacttttggttagaattatgggggaaaagttttgttgtga |
8070950 |
T |
|
| Q |
513 |
ataaacatcgtggattactgagtaatactatgaaattggttgcttcactgcagaccttgaatcgcatgttcatcatcaatgcaggttctggatttagaat |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8070951 |
ataaacatcgtggattactgagtaatactatgaaattggttgcttcactgcagaccttgaatcgcatgttcatcatcaatgcaggttctggatttagaat |
8071050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 32617189 - 32616911
Alignment:
| Q |
14 |
ttatactaggaatttgaattcaaggaaattgatgaagtattgaaatattatccacaaggacatcatggtgtagataaagaaggacgacctgtgtatatag |
113 |
Q |
| |
|
|||| |||||| ||||||||| ||||| |||| ||||| || |||||||||| || ||| ||||||| ||||||||||||||| |||| | || || | |
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|
| T |
32617189 |
ttattctaggattttgaattcgaggaacttgaggaagtggtgcaatattatcctcatggaaatcatggagtagataaagaaggaagaccaatctacattg |
32617090 |
T |
|
| Q |
114 |
aaagattaggacaagtcgatgcgaccaagatgatgcaagtcacaaccatggatcgctatatcaaataccatgtaaaggagtttgagaggacattcgatgt |
213 |
Q |
| |
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| || || |||||||| ||||| || ||| || ||||||||||||| |||||||| ||| ||||||||||||| ||||| |||||||| ||||| ||| | |
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| T |
32617089 |
agaggttgggacaagttgatgccacaaagttgctgcaagtcacaacaatggatcgatatgtcaaataccatgtcaaggaatttgagagaacatttgatct |
32616990 |
T |
|
| Q |
214 |
aaagtttgcggcttgttccattgctgccaagaagcacatcgatcaaagtacgactatcctggatgtggagggagtggta |
292 |
Q |
| |
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|||||| | || ||| |||||||||| ||||| ||||| |||||||| || || || |||||||| | ||||||||| |
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|
| T |
32616989 |
caagtttccagcctgtaccattgctgcaaagaaacacatagatcaaagcaccaccattttggatgtgcaaggagtggta |
32616911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 545 - 613
Target Start/End: Complemental strand, 32616507 - 32616439
Alignment:
| Q |
545 |
aaattggttgcttcactgcagaccttgaatcgcatgttcatcatcaatgcaggttctggatttagaatg |
613 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32616507 |
aaattggttgattcactgcagaccttgaatcgcatgttcatcatcaatgcaggttctggattcagaatg |
32616439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 200
Target Start/End: Complemental strand, 54781080 - 54780925
Alignment:
| Q |
45 |
atgaagtattgaaatattatccacaaggacatcatggtgtagataaagaaggacgacctgtgtatatagaaagattaggacaagtcgatgcgaccaagat |
144 |
Q |
| |
|
||||||| |||| ||||||||||| || ||||||||||||||||| |||||| | ||||| ||||| |||||| | ||| |||| ||| ||| ||| | |
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|
| T |
54781080 |
atgaagttgtgaagtattatccacatggccatcatggtgtagataaggaaggaaggcctgtttatattgaaagacttggaaaagttgatccgaacaaact |
54780981 |
T |
|
| Q |
145 |
gatgcaagtcacaaccatggatcgctatatcaaataccatgtaaaggagtttgaga |
200 |
Q |
| |
|
|||||| || ||||| |||||| | ||| | || |||||||| | |||||||||| |
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|
| T |
54780980 |
gatgcaggttacaactatggatagatatgtaaagtaccatgtgcaagagtttgaga |
54780925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 54772753 - 54773023
Alignment:
| Q |
21 |
aggaatttgaattcaaggaaattgatgaagtattgaaatattatccacaaggacatcatggtgtagataaagaaggacgacctgtgtatatagaaagatt |
120 |
Q |
| |
|
|||| ||||||||| ||||| | |||||||| | |||| |||||||||||||||||||| || ||||| || ||| ||||||| || || |||||||| |
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|
| T |
54772753 |
aggattttgaattcgaggaactagatgaagttctaaaatgctatccacaaggacatcatggagttgataaggatggaagacctgtttacattgaaagatt |
54772852 |
T |
|
| Q |
121 |
aggacaagtcgatgcgaccaagatgatgcaagtcacaaccatggatcgctatatcaaataccatgtaaaggagtttgagaggacattcgatgtaaagttt |
220 |
Q |
| |
|
|| ||||| ||| | |||| || ||||||| || | |||| || ||| |||| ||||||||| |||||||||||| | || | ||| ||||| |
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| T |
54772853 |
gggtcaagttgattgtaacaagttgttgcaagtaacctcagtggaacgttatctcaagtaccatgtacgagagtttgagagggcttttgctgttaagttg |
54772952 |
T |
|
| Q |
221 |
gcggcttgttccattgctgccaagaagcacatcgatcaaagtacgactatcctggatgtggagggagtggt |
291 |
Q |
| |
|
| || ||||| ||||| || |||||||| || || ||||| || ||||| |||||||| | |||||||| |
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|
| T |
54772953 |
cctgcatgttcaattgcagcaaagaagcatattgaccaaagcacaactattttggatgtgcaaggagtggt |
54773023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 5326589 - 5326859
Alignment:
| Q |
21 |
aggaatttgaattcaaggaaattgatgaagtattgaaatattatccacaaggacatcatggtgtagataaagaaggacgacctgtgtatatagaaagatt |
120 |
Q |
| |
|
|||| ||||||||| ||||| | |||||||| | ||||| |||||||||||||||||||| || ||||| || ||| ||||||| || || |||||||| |
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|
| T |
5326589 |
aggattttgaattcgaggaactagatgaagttctaaaatactatccacaaggacatcatggagttgataaggatggaagacctgtttacattgaaagatt |
5326688 |
T |
|
| Q |
121 |
aggacaagtcgatgcgaccaagatgatgcaagtcacaaccatggatcgctatatcaaataccatgtaaaggagtttgagaggacattcgatgtaaagttt |
220 |
Q |
| |
|
|| ||||| ||| | |||| || ||||||| || | |||| || ||| |||| ||||||||| |||||||||||| | || | ||| ||||| |
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|
| T |
5326689 |
gggtcaagttgattgtaacaagttgttgcaagtaacctcagtggaacgttatctcaagtaccatgtacgagagtttgagagggcttttgctgttaagttg |
5326788 |
T |
|
| Q |
221 |
gcggcttgttccattgctgccaagaagcacatcgatcaaagtacgactatcctggatgtggagggagtggt |
291 |
Q |
| |
|
| || ||||| ||||| || |||||||| || || ||||| || ||||| |||||||| | |||||||| |
|
|
| T |
5326789 |
cctgcatgttcaattgcagcaaagaagcatattgaccaaagcacaactattttggatgtgcaaggagtggt |
5326859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 303
Target Start/End: Original strand, 26638921 - 26639080
Alignment:
| Q |
144 |
tgatgcaagtcacaaccatggatcgctatatcaaataccatgtaaaggagtttgagaggacattcgatgtaaagtttgcggcttgttccattgctgccaa |
243 |
Q |
| |
|
|||||||||| || || ||||| || ||| | || ||||| ||| ||||||||||| ||||| | |||| ||| | | |||||||| ||||| || || |
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|
| T |
26638921 |
tgatgcaagtaacgactatggaccgatatcttaagtaccacgtacgggagtttgagaagacatccaatgttaagatgcctgcttgttcaattgcagcaaa |
26639020 |
T |
|
| Q |
244 |
gaagcacatcgatcaaagtacgactatcctggatgtggagggagtggtatgcataaaaat |
303 |
Q |
| |
|
||||||||| |||||||| || |||||| ||||||| | ||||||||||| || ||||| |
|
|
| T |
26639021 |
gaagcacattgatcaaagcacaactatcttggatgtccaaggagtggtatgtatcaaaat |
26639080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 245
Target Start/End: Complemental strand, 7209973 - 7209785
Alignment:
| Q |
57 |
aatattatccacaaggacatcatggtgtagataaagaaggacgacctgtgtatatagaaagattaggacaagtcgatgcgaccaagatgatgcaagtcac |
156 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||| ||||||| ||||| || || |||| |||| ||| | | ||| | |||||||| || |
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|
| T |
7209973 |
aatattatccacatggttatcatggtgttgataaagaaggaagacctgtttatattgagaggctaggtaaagttgatcccaataagcttatgcaagtaac |
7209874 |
T |
|
| Q |
157 |
aaccatggatcgctatatcaaataccatgtaaaggagtttgagaggacattcgatgtaaagtttgcggcttgttccattgctgccaaga |
245 |
Q |
| |
|
|||||||| | ||| | |||||||||||| ||| ||||||| || || | ||| |||||| | |||||||| |||||||| |||| |
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|
| T |
7209873 |
taccatggaaaggtatttaaaataccatgtacagggttttgagaaaacgtttgctgttaagtttcctgcttgttctattgctgcaaaga |
7209785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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