View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15222_high_12 (Length: 250)
Name: NF15222_high_12
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 2491403 - 2491654
Alignment:
| Q |
1 |
gactttgaatatcaaagctaactaacatagacatatttgtgataaaa-ttactcatgtttcatccacaaaataattaatcatatttagaagtaagtattt |
99 |
Q |
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| T |
2491403 |
gactttgaatatcaaagctaactaacataaacatgtttgtgataaaaattactcatgtttcatccacaaaataatttatcatatttagaactaagtattt |
2491502 |
T |
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| Q |
100 |
gatatatgtcataaagatttgacaaagttttacc---nnnnnnnctctctttgaaatagcttattcaattgataagtcaagtacaaaacacaaagtttta |
196 |
Q |
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|||||||||||||||||||||||||||||||||| | | ||||||||| | ||||||||||||||| ||||| |||| ||||||||||| |
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| T |
2491503 |
gatatatgtcataaagatttgacaaagttttaccatttttttctttttttttgaaataacatattcaattgataagctaagtataaaatacaaagtttta |
2491602 |
T |
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| Q |
197 |
tcttaattgaagactacaaaacacaaacatctccttttattcaaacatagga |
248 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
2491603 |
ccttaattgaataatacaaaacacaaacatctccttttattcaaacatagga |
2491654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 2491267 - 2491325
Alignment:
| Q |
49 |
tactcatgtttca-tccacaaaataattaatcatatttagaagtaagtatttgatatat |
106 |
Q |
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|||||||||| || |||||||||||||| |||||||||| || |||||||||||||||| |
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| T |
2491267 |
tactcatgttccaatccacaaaataatttatcatatttacaactaagtatttgatatat |
2491325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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