View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15222_high_14 (Length: 236)
Name: NF15222_high_14
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 35630476 - 35630676
Alignment:
| Q |
20 |
cattcgatcatggtatctatatatgtatccatgaatggtgacggggtctttggaagaatccatcttctctttgtattttgtttggaagagtaattataat |
119 |
Q |
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| T |
35630476 |
cattcgatcatggtatctatatatgtatccatgaatggtgacggggtctttggaagaatccatcttctctttgtattttgtttggaagagtaattataat |
35630575 |
T |
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| Q |
120 |
atagtaattataatttattaacnnnnnnnnttttagcagaggtgggagcacatgtttaaaaaccatcacacaaaaaaccatagaagatttgtaatgccta |
219 |
Q |
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| T |
35630576 |
atagtaattataatttattaacaaaaaaaa-attagcagaggtgggagcacatgtttaaaaaccatcacacaaaaaaccaaagaagatttgtaatgctta |
35630674 |
T |
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| Q |
220 |
tg |
221 |
Q |
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|| |
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| T |
35630675 |
tg |
35630676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 4033502 - 4033474
Alignment:
| Q |
107 |
gagtaattataatatagtaattataattt |
135 |
Q |
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| T |
4033502 |
gagtaattataatatagtaattataattt |
4033474 |
T |
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