View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15222_high_15 (Length: 235)
Name: NF15222_high_15
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10462044 - 10462264
Alignment:
| Q |
1 |
aaaccctaatgagataccccctgcaaagaaacaagaaacaatgtcggaacttttacccttggttgattctagtttgatgactgtaaccacctctgcagac |
100 |
Q |
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| T |
10462044 |
aaaccctaatgaggtaccccctgcaaagaaaccagaaacaatgtcggaactgttacccttggttgattctagtttgatgactataaccacctctgcagac |
10462143 |
T |
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| Q |
101 |
gtgaaggaataccaaaactcattcgtatttgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatggtaaagtggttgtga |
200 |
Q |
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| T |
10462144 |
gtgaaggaataccaaaactcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtga |
10462243 |
T |
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| Q |
201 |
taacgggcgagaggaagaggg |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
10462244 |
taaccggcgagaggaagaggg |
10462264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 10540029 - 10539860
Alignment:
| Q |
53 |
ttacccttggttgattctagtttgatgactgtaaccacctc-tgcagacgtgaaggaataccaaaactcattcgtatttgagatggacttgccgggattg |
151 |
Q |
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||||| |||||||||||||||||||| ||| ||||||| | |||||||||||||||||| |||||||| | ||| || |||| || ||| |||| || |
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| T |
10540029 |
ttaccattggttgattctagtttgatttctgcaaccaccccctgcagacgtgaaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatg |
10539930 |
T |
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| Q |
152 |
aaatctggtgatatcaaggttgaggttgaagatggtaaagtggttgtgataacgggcgagaggaagaggg |
221 |
Q |
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| T |
10539929 |
aaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataaccggcgagaggaagaggg |
10539860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 3744996 - 3744916
Alignment:
| Q |
141 |
tgccgggattgaaatctggtgatatcaaggttgaggttgaagatggtaaagtggttgtgataacgggcgagaggaagaggg |
221 |
Q |
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|||| |||||||||||||| ||||| |||||| |||| ||||||| ||| ||| ||||||||| || ||||||||||||| |
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| T |
3744996 |
tgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagaggg |
3744916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 48303243 - 48303153
Alignment:
| Q |
95 |
gcagacgtgaaggaataccaaaactcattcgtatttgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatg |
185 |
Q |
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| T |
48303243 |
gcagacgtgaaagagtatccaaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatg |
48303153 |
T |
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