View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15222_high_3 (Length: 399)
Name: NF15222_high_3
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_high_3 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 270535 - 270160
Alignment:
| Q |
15 |
ctaagaacatgttcatcctcagccataggagagaaaaaa-ccttaggacaccttgactttacaccatattttttacaaaagggaacccaaactttagcaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
270535 |
ctaagaacatgttcatcctcagccataggagagaaaaaaaccttaggacaccttgactttacaccatattttttacaaaagggaacccatactttagcaa |
270436 |
T |
|
| Q |
114 |
attgagtagcctctttaatcccaaaaagagtaatagcagaagcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270435 |
attgagtagcctctttaatcccaaaaagagtaatagcagaagcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagc |
270336 |
T |
|
| Q |
214 |
agaaacaacagtgttcataacttcaaccgttggttctttttcaggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270335 |
agaaacaacagtgttcataacttcaaccgttggttctttttcaggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaat |
270236 |
T |
|
| Q |
314 |
ttctcgaccattaccgatcgactcaccggacgccatcggtatgcttggttgaaaaaccacaagactgatagaataa |
389 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270235 |
ttctcgaccattaccgatcgactcaccggccgccatcggtatgcttggttgaaaaaccacaagactgatagaataa |
270160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 392
Target Start/End: Original strand, 17588850 - 17589219
Alignment:
| Q |
24 |
tgttcatcctcagccataggagagaaaaaac-cttaggacaccttgactttacaccatattttttacaaaagggaacccaaactttagcaaattgagtag |
122 |
Q |
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|||||||||||| ||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| || |
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| T |
17588850 |
tgttcatcctcacccaaaggtgagaaaaaaatcttaggacaccttgacttaacaccatatttcttacaaaaaggaacccaaactttagcaaattgaaaag |
17588949 |
T |
|
| Q |
123 |
cctctttaatcccaaaaagagtaatagcagaagcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaac |
222 |
Q |
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|||||||||||||||| |||||||| | |||| | |||||||||||||||||||||||||| |||| || |||||||||||| ||||||||||||||||| |
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| T |
17588950 |
cctctttaatcccaaatagagtaatggtagaacctccatcatcagaaagataaatagaaagtttatcaggagggtaatccatagcaatagcagaaacaac |
17589049 |
T |
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| Q |
223 |
agtgttcataacttcaaccgttggttctttttcaggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgacc |
322 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
17589050 |
agtgttcataacttctaccgttggttctttttcaggatcaatcgtacacacaaatatgtcgagtcccggtaacttctcttcagccggtaatttctcggtc |
17589149 |
T |
|
| Q |
323 |
attaccgatcgactcaccggacgccatcggtatgcttggttgaaaaaccacaagactgatagaataatct |
392 |
Q |
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|| || || ||| ||||||| ||||| ||| | ||||||||||||| ||||| | |||||||||||||| |
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| T |
17589150 |
atcactgaacgagtcaccggccgccaacggaacgcttggttgaaaacccacataaatgatagaataatct |
17589219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 25 - 392
Target Start/End: Complemental strand, 12134 - 11766
Alignment:
| Q |
25 |
gttcatcctcagccataggagagaa-aaaaccttaggacaccttgactttacaccatattttttacaaaagggaacccaaactttagcaaattgagtagc |
123 |
Q |
| |
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|||||| |||| ||| || |||||| |||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| | ||| |
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| T |
12134 |
gttcattctcacccaaagcagagaagaaaaacttaggacaccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagc |
12035 |
T |
|
| Q |
124 |
ctctttaatcccaaaaagagtaatagcagaagcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaaca |
223 |
Q |
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|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
12034 |
ctctttaatcccaaaaagagtaataggggaacctccatcatcagaaagataaatagaaagtttattagaagggtagtccattgcaatagcagaaataaca |
11935 |
T |
|
| Q |
224 |
gtgttcataacttcaaccgttggttctttttcaggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgacca |
323 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| || |
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| T |
11934 |
gtgttcataacatcaaccgttggttctttttcaggatcaatcgtacacacaaatatgtcgagtcccggtaacttctcgtcgggcggtaatttctcggtca |
11835 |
T |
|
| Q |
324 |
ttaccgatcgactcaccggacgccatcggtatgcttggttgaaaaaccacaagactgatagaataatct |
392 |
Q |
| |
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| || || ||| | ||| | | ||| ||| |||||||||||||||||||||| | |||||||||||||| |
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| T |
11834 |
taactgaacgatttaccagcctccaacggaatgcttggttgaaaaaccacaaaaatgatagaataatct |
11766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 16385691 - 16386049
Alignment:
| Q |
17 |
aagaacatgttcatcctcagccataggagagaaaaaac-cttaggacaccttgactttacaccatattttttacaaaagggaacccaaactttagcaaat |
115 |
Q |
| |
|
||||| ||||||||||||| ||| || |||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
16385691 |
aagaagatgttcatcctcacccaaagcagagaaaaaaaacttaggacaccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaat |
16385790 |
T |
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| Q |
116 |
tgagtagcctctttaatcccaaaaagagtaatagcagaagcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcag |
215 |
Q |
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||| |||||||||||| ||||||||||||| || |||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
16385791 |
tgaaaagcctctttaataccaaaaagagtaacaggagaacctccatcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcag |
16385890 |
T |
|
| Q |
216 |
aaacaacagtgttcataacttcaaccgttggttctttttcaggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaattt |
315 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| || |
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| T |
16385891 |
aaacaacagtgttcataacatcaatagttggttctttttcaggatcaattgtacacacaaatatgtcgagtcccggtaacttctcgtcggccggtaaatt |
16385990 |
T |
|
| Q |
316 |
ctcgaccattaccgatcgactcaccggacgccatcggtatgcttggttgaaaaaccaca |
374 |
Q |
| |
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|||| ||| || |||||| | | ||| ||||| ||| ||||||||| | ||||||||| |
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|
| T |
16385991 |
ctcggtcataactgatcgagttatcggccgccaacggaatgcttggtgggaaaaccaca |
16386049 |
T |
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