View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15222_high_6 (Length: 345)
Name: NF15222_high_6
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 28315400 - 28315091
Alignment:
| Q |
17 |
cctactactactagataaaagctataacatatataactaataccatatcccttacgtaccatgtgaagcaatctctcctcttttgattgagatatcatcc |
116 |
Q |
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| T |
28315400 |
cctactactactaaataaaagctataacatatatatctaataccatatcccttac----catgtgaagcaatctctcctcttctgattgagatatcatcc |
28315305 |
T |
|
| Q |
117 |
atcactatctttcggagcttcaataagagtgctttcaattttattaattcgtcatagctaagttcttgaattttgagactatcaatcatcatcttcagtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28315304 |
atcactatctttcggagcttcaataagagtgctttcaattttattaattcgtcatatctaagttcttgaattttgagactatcaatcatcatcttcagtt |
28315205 |
T |
|
| Q |
217 |
cttccattttgagactatgcagtgatttttgtatggtttgtgaagttaatatatatacaaaaatttaaataatagtttaatgctataattcataaagtat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28315204 |
cttccattttgagactatgcagtgatttttgtatggtttgtgaagttaatatatatacaaaaaaataaataatagtttaatgctataattcataaagtat |
28315105 |
T |
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| Q |
317 |
tcaaattttgtgtt |
330 |
Q |
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|||||||||||||| |
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| T |
28315104 |
tcaaattttgtgtt |
28315091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 38430724 - 38430641
Alignment:
| Q |
231 |
ctatgcagtgatttttgtatggtttgtgaagttaatatatatacaaaaatttaaataatagtttaatgctataattcataaagta |
315 |
Q |
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|||||||| ||| ||||||||| ||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
38430724 |
ctatgcagcgatgtttgtatggcttgtggagttaatatatatacaaaaa-ataaatagtagtttaatgatataattcataaagta |
38430641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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