View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15222_high_8 (Length: 270)
Name: NF15222_high_8
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 53532568 - 53532323
Alignment:
| Q |
12 |
aattctatcacacaccagaaaatcttctggtgacattcaaccgtctcctaataccacacatacataagaaaaagtttcccaaaatcataaattttcttga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53532568 |
aattctatcacacaccagaaaatcttctggtgacattcaaccgtctcctaataccacacatacataagaaaaagtttcccaaaatcataaattttcttga |
53532469 |
T |
|
| Q |
112 |
agttattatgttctaaaaatattttaatacaaaaggatccatcatttcctaacaagaaaacaacaatttaactattcccagtcataagtcagaattgttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53532468 |
agttattatgttctaaaaatattttaatacaaaaggatccatcatttcctaacaagaaaacaacaatttaactattcccagtcataagtcagaattgttt |
53532369 |
T |
|
| Q |
212 |
tcaataaccattaattgaatgcgactaatctgagatctgatagttt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53532368 |
tcaataaccattaattgaatgcgactaatctgagatctgatagttt |
53532323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 20743019 - 20743158
Alignment:
| Q |
25 |
accagaaaatcttctggtgacattcaaccgtctcctaataccacacatacataagaaaaagtttcccaaaatcataaattttcttgaagttattatgttc |
124 |
Q |
| |
|
|||| ||||||||||||||| || |||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
20743019 |
accacaaaatcttctggtgagatccaactgtctcctaatgccacacctacataagaaaaagtttcccaaaatcatactttttctttcagttgttatgttc |
20743118 |
T |
|
| Q |
125 |
taaaaatattttaatacaaaaggatccatcatttcctaac |
164 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
20743119 |
taaatatagtttaatacaaaagggtccatcatttcctaac |
20743158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University