View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15222_low_1 (Length: 693)

Name: NF15222_low_1
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15222_low_1
NF15222_low_1
[»] chr5 (2 HSPs)
chr5 (233-688)||(8035248-8035699)
chr5 (113-233)||(22780008-22780128)
[»] chr2 (6 HSPs)
chr2 (45-234)||(6667463-6667652)
chr2 (113-234)||(28922365-28922485)
chr2 (113-218)||(14456257-14456362)
chr2 (113-231)||(21922337-21922453)
chr2 (163-213)||(14456373-14456423)
chr2 (166-234)||(28926075-28926144)
[»] chr3 (5 HSPs)
chr3 (113-234)||(15291461-15291582)
chr3 (112-203)||(48909782-48909873)
chr3 (113-234)||(49235426-49235547)
chr3 (164-234)||(15996379-15996449)
chr3 (165-234)||(1529165-1529236)
[»] chr7 (2 HSPs)
chr7 (113-236)||(48850724-48850847)
chr7 (141-237)||(39742270-39742367)
[»] chr4 (4 HSPs)
chr4 (113-217)||(7810064-7810169)
chr4 (148-234)||(6898735-6898822)
chr4 (188-235)||(27067873-27067920)
chr4 (166-235)||(12094856-12094926)
[»] chr6 (3 HSPs)
chr6 (113-234)||(26840415-26840536)
chr6 (113-234)||(26839989-26840110)
chr6 (188-234)||(31665653-31665699)
[»] chr8 (3 HSPs)
chr8 (166-238)||(9888950-9889023)
chr8 (166-223)||(4966451-4966509)
chr8 (188-234)||(42315342-42315388)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 233 - 688
Target Start/End: Complemental strand, 8035699 - 8035248
Alignment:
Q  233 attttggtggactggcctaatattctctccctccattaaaaaagatcatgctaacctatgcactaaagtacaagttaagaagataaaataagaaagaata 332  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||  |||    
T  8035699 attttggtggactggcctaatattttctccctccattaaaaagggtcatgctaacttatgcactaaagtacaagttaagaagataaaaaaagaaatgata 8035600  T
Q  333 aagaaaatttgttttgaaaacatgaattaacttttaagacatggaatacacacacaagtttcnnnnnnntatttctatctttaactttttaacttatgtg 432  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||||||    ||||||       ||||| ||  |||||||||||||||||||||    
T  8035599 aagaaaatttgttttgaaaacatgaatcaacttttaaaacatcgaatacaca----agtttcaaaaagatatttttacttttaactttttaacttatgtg 8035504  T
Q  433 tggggcacaagttcgtattttcctttaaaaaattaagatattcgctatacacaattgcagaaattaattcattgaatatgagagaaccataatagtttac 532  Q
    | |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||     
T  8035503 ttgggcacgagttcatattttcctttaaaaaattaagatattcgctatgcacaattgtagaaattaattcattgaatatgagagaaccataatagtttat 8035404  T
Q  533 acgacactctttatccttattgagtatcactttcaattatttcatataagtaaagaaaaagttgtaaataaatagtgtggcatttttataaaattactct 632  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8035403 acgacactctttatccatgttgagtatcactttcaattatttcatataagtaaagaaaaagttgtaaataaatagtgtggcatttttataaaattactct 8035304  T
Q  633 tttgttttttgacgtaatataaaattactcttattaatcattaaatcctgcctatg 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8035303 tttgttttttgacgtaatataaaattactcttattaatcattaaatcctgcctatg 8035248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 22780008 - 22780128
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgacca 212  Q
    |||||| ||||||||||| |||||||| |||||| |||||||||||||  ||||||||||||||||||||||  |||||||||||| ||||| |||| ||    
T  22780008 aaagtgaaatgctgattatgattagcacttagaaggagttaatgctaacacaatggagggaaaaattaggttaagattagggtaaacaatagcttgatca 22780107  T
Q  213 aacaagctttagaaagaaaga 233  Q
     ||||||||||||||||||||    
T  22780108 gacaagctttagaaagaaaga 22780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 6667652 - 6667463
Alignment:
Q  45 tggatattcatttgcatggaaaacacgaagagaggtatgttggaaataattatttgtgtgggaaagctaaagtggaatgctgattaggattagcatttag 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667652 tggatattcatttgcatggaaaacacgaagagaggtatgttggaaatagttatttgtgtgggaaagctaaagtggaatgctgattaggattagcatttag 6667553  T
Q  145 aaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgaccaaacaagctttagaaagaaagat 234  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  6667552 aaagagttaatgctaatgcaatggagggaaaaattaggttaggattagggtaaacaatagcttgaccaaacaagctttagaaagaaagat 6667463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 28922365 - 28922485
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgacca 212  Q
    |||||||||||||||||||||||| || |||||| || ||||||||||  ||||||| ||||||||||||||  |||||||||||| ||||| |||||||    
T  28922365 aaagtggaatgctgattaggattaccacttagaatga-ttaatgctaacacaatggatggaaaaattaggttaagattagggtaaacaatagcttgacca 28922463  T
Q  213 aacaagctttagaaagaaagat 234  Q
     ||| ||||||| ||| |||||    
T  28922464 gacatgctttagtaagtaagat 28922485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 14456257 - 14456362
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgacca 212  Q
    ||||||||||| ||||||||| || || |||||| || |||||||||   |||||||||||||||||||  ||| |||||||||||| |||| |||||||    
T  14456257 aaagtggaatgttgattaggaataccacttagaaggatttaatgctatcacaatggagggaaaaattagagttgaattagggtaaatgatagcttgacca 14456356  T
Q  213 aacaag 218  Q
    ||||||    
T  14456357 aacaag 14456362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 21922453 - 21922337
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaa-attaggtttggattagggtaaataatagtttgacc 211  Q
    ||||||||||||||||||||| | ||| ||||||   |||||||||||    | |||||||||| ||||||||  ||||||||||| | |||| |||| |    
T  21922453 aaagtggaatgctgattaggaattgcacttagaa---gttaatgctaagattaaggagggaaaatattaggttaagattagggtaagttatagcttgatc 21922357  T
Q  212 aaacaagctttagaaagaaa 231  Q
    | ||||||||||||||||||    
T  21922356 agacaagctttagaaagaaa 21922337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 14456373 - 14456423
Alignment:
Q  163 caatggagggaaaaattaggtttggattagggtaaataatagtttgaccaa 213  Q
    |||||||||||||||||||| ||| |||||||||||| |||| ||||||||    
T  14456373 caatggagggaaaaattagggttgaattagggtaaatgatagcttgaccaa 14456423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 28926144 - 28926075
Alignment:
Q  166 tggagggaaaaattaggtttgga-ttagggtaaataatagtttgaccaaacaagctttagaaagaaagat 234  Q
    |||||||||||||||||||  || ||||||| | |||||| ||||||| ||||||||||| |||||||||    
T  28926144 tggagggaaaaattaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagat 28926075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 9e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 15291582 - 15291461
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgacca 212  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||| |||||||    
T  15291582 aaagtggaatgttgattaggattagcacttagaaggagttaatgctaatacaatggagggaaaaattaggttaagattagggtaaacaatagcttgacca 15291483  T
Q  213 aacaagctttagaaagaaagat 234  Q
    |||||||||||| |||||||||    
T  15291482 aacaagctttagtaagaaagat 15291461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 48909782 - 48909873
Alignment:
Q  112 taaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataata 203  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||| ||||| ||||||||||||||||  |||||||||||| ||||    
T  48909782 taaagtggaatgctgattaggattagcatttagaaggagttaacactaatacaatgaagggaaaaattaggttaagattagggtaaacaata 48909873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 49235426 - 49235547
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgacca 212  Q
    ||||||||||||||||||||| || || ||| ||||| |||||| ||   ||||||||| ||||||||   ||| |||||||||||| |||| |||||||    
T  49235426 aaagtggaatgctgattaggaataccacttaaaaagatttaatgttatcacaatggaggaaaaaattaatgttgaattagggtaaatgatagcttgacca 49235525  T
Q  213 aacaagctttagaaagaaagat 234  Q
    ||||| |||||| |||||||||    
T  49235526 aacaaactttagtaagaaagat 49235547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 15996379 - 15996449
Alignment:
Q  164 aatggagggaaaaattaggtttggattagggtaaataatagtttgaccaaacaagctttagaaagaaagat 234  Q
    |||| |||||||||||||||| | ||||||||||| ||||| |||| || ||||||||||| |||||||||    
T  15996379 aatgcagggaaaaattaggttagaattagggtaaacaatagcttgatcagacaagctttagtaagaaagat 15996449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 1529236 - 1529165
Alignment:
Q  165 atggagggaaaaa-ttaggtttgga-ttagggtaaataatagtttgaccaaacaagctttagaaagaaagat 234  Q
    ||||||||||||| |||||||  || ||||||| | |||||| ||||||||||||||||||| |||||||||    
T  1529236 atggagggaaaaaattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 48850847 - 48850724
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgacca 212  Q
    |||||| |||||||||||||||||||| |||||| |||||||||||||   |||||||||||||||||||||  |||||||||||| ||||| |||| ||    
T  48850847 aaagtgaaatgctgattaggattagcacttagaaggagttaatgctaacataatggagggaaaaattaggttaagattagggtaaacaatagcttgatca 48850748  T
Q  213 aacaagctttagaaagaaagattt 236  Q
     |||||||||||||||||||||||    
T  48850747 gacaagctttagaaagaaagattt 48850724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 39742270 - 39742367
Alignment:
Q  141 ttagaaagagttaatgctaatgcaatggagggaaaa-attaggtttggattagggtaaataatagtttgaccaaacaagctttagaaagaaagatttt 237  Q
    |||||| |||||||||||||   ||| ||||||||| ||||||||  ||||||||| |  ||||| |||| |||||||||||||| ||||||||||||    
T  39742270 ttagaaggagttaatgctaacataatcgagggaaaatattaggttaagattagggttatcaatagcttgatcaaacaagctttagtaagaaagatttt 39742367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 7810169 - 7810064
Alignment:
Q  113 aaagtggaatgctgattaggattagcattta--gaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgac 210  Q
    ||||||||||| ||||||||||||||| |||  ||| |||||||| | ||  ||||||||||||||||||||||  |||||||||||| ||||| |||||    
T  7810169 aaagtggaatgttgattaggattagcacttatagaaggagttaatccgaaa-caatggagggaaaaattaggttaagattagggtaaacaatagcttgac 7810071  T
Q  211 caaacaa 217  Q
    |||||||    
T  7810070 caaacaa 7810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 6898735 - 6898822
Alignment:
Q  148 gagttaatgctaatgcaatggagggaaaa-attaggtttggattagggtaaataatagtttgaccaaacaagctttagaaagaaagat 234  Q
    |||||||||||||  ||||||| |||||| ||||||||  ||||||||| |  ||||| |||| |||||||||||||| |||||||||    
T  6898735 gagttaatgctaacacaatggacggaaaatattaggttaagattagggttaccaatagcttgatcaaacaagctttagtaagaaagat 6898822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 27067920 - 27067873
Alignment:
Q  188 attagggtaaataatagtttgaccaaacaagctttagaaagaaagatt 235  Q
    ||||||||| |  |||||||||||||||||||||||| ||||||||||    
T  27067920 attagggtataggatagtttgaccaaacaagctttagtaagaaagatt 27067873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 12094856 - 12094926
Alignment:
Q  166 tggagggaaaa-attaggtttggattagggtaaataatagtttgaccaaacaagctttagaaagaaagatt 235  Q
    ||||||||||| ||||||||   ||||||||   |||||| ||||||||||||||||||| ||||||||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagatt 12094926  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 26840536 - 26840415
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgacca 212  Q
    ||||||||||| ||||||||| |  || |||||| ||||||||| |||      ||||||||||| ||||||  ||||||||| ||| || | |||||||    
T  26840536 aaagtggaatgttgattaggaattacacttagaaggagttaatgttaagatttgggagggaaaaagtaggttaagattagggttaatgatggcttgacca 26840437  T
Q  213 aacaagctttagaaagaaagat 234  Q
    ||||||||||||||||||||||    
T  26840436 aacaagctttagaaagaaagat 26840415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 26840110 - 26839989
Alignment:
Q  113 aaagtggaatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaaattaggtttggattagggtaaataatagtttgacca 212  Q
    ||||||||||| ||||||||| |  || |||||| ||||||||| |||      ||||||||||| ||||||  ||||||||| ||| || | |||| ||    
T  26840110 aaagtggaatgttgattaggaattacacttagaaggagttaatgttaagatttgggagggaaaaagtaggttaagattagggttaatgatggcttgatca 26840011  T
Q  213 aacaagctttagaaagaaagat 234  Q
    ||||| ||||||||||||||||    
T  26840010 aacaaactttagaaagaaagat 26839989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 31665653 - 31665699
Alignment:
Q  188 attagggtaaataatagtttgaccaaacaagctttagaaagaaagat 234  Q
    |||||||| | |||||| ||||||||||||||||||| |||||||||    
T  31665653 attagggttactaatagcttgaccaaacaagctttagtaagaaagat 31665699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 9888950 - 9889023
Alignment:
Q  166 tggagggaaaaattaggtttgga-ttagggtaaataatagtttgaccaaacaagctttagaaagaaagattttg 238  Q
    |||||||||| ||||||||| || |||||||||| ||||| ||||||| ||||||||||  ||| |||||||||    
T  9888950 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttaataagtaagattttg 9889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 4966509 - 4966451
Alignment:
Q  166 tggagggaaaaattaggtttgga-ttagggtaaataatagtttgaccaaacaagcttta 223  Q
    |||||||||| ||||||||| || |||||||||| ||||| ||||||| ||||||||||    
T  4966509 tggagggaaatattaggtttagaattagggtaaacaatagcttgaccagacaagcttta 4966451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 42315388 - 42315342
Alignment:
Q  188 attagggtaaataatagtttgaccaaacaagctttagaaagaaagat 234  Q
    |||||||| | |||||| ||||||||||||||||||| |||||||||    
T  42315388 attagggttactaatagcttgaccaaacaagctttagtaagaaagat 42315342  T

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