View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15222_low_12 (Length: 269)
Name: NF15222_low_12
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_low_12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 39791536 - 39791659
Alignment:
| Q |
146 |
gatcttcaaaatttgatgtttatataaacaaaaagttacttggagatgtatttatagttttgattaattcatgaattataattatacttgtatccaatga |
245 |
Q |
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| T |
39791536 |
gatcttcaaaatttgatgtttatataaacaaaaagttacttggagatgtatttatagttttgattaattcatgaattataattatacttgtatccaatga |
39791635 |
T |
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| Q |
246 |
tgtgaaagataaatcaaactatgt |
269 |
Q |
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| T |
39791636 |
tgtgaaagataaatcaaactatgt |
39791659 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 39791405 - 39791472
Alignment:
| Q |
15 |
agagtaccctaaaaacgacagtatccatgaatgattgtttgaagatgatcaagtcgtttgaataaatg |
82 |
Q |
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| T |
39791405 |
agagtgccctaaaaacgacagtatccatgaatgattgtttgaagatgatcaagtcgtttgaataaatg |
39791472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 39795095 - 39795152
Alignment:
| Q |
15 |
agagtaccctaaaaacgacagtatccatgaatgattgtttgaagatgatcaagtcgttt |
73 |
Q |
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| T |
39795095 |
agagtatcctaaaaacaacggtatccatgaatg-tcgtttgaagatgatcaagtcgttt |
39795152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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