View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15222_low_13 (Length: 266)
Name: NF15222_low_13
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 14607462 - 14607623
Alignment:
| Q |
90 |
attataagttgcttcacaaaaaattgaactcattgtttaaagaataaatgttgtagaactatagagaaaattgaagctaatataatgatgctatgtattc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14607462 |
attataagttgcttcacaaaaaattgaactcattgtttaaagaataaatgttgtagaactatagagaaaattgaagttaatataatgatgctatgtattc |
14607561 |
T |
|
| Q |
190 |
gtgataatcttttatgcctatgatcaccatcttttgaagtgtttttacttcagaattatttg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14607562 |
gtgataatcttttatgcctatgatcaccatcttttgaagtgtttttacttcagaattatttg |
14607623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 16026636 - 16026798
Alignment:
| Q |
90 |
attataagttgcttcacaaaaaattgaactca-ttgtttaaagaataaatgttgtagaactatagagaaaattgaagctaatataatgatgctatgtatt |
188 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16026636 |
attataagttgcttcacaaaaaattgaactcaattgtttaaagaataaatgttgtagaactatagagaaaattgaagctaatataatgatgctatgtatt |
16026735 |
T |
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| Q |
189 |
cgtgataatcttttatgcctatgatcaccatcttttgaagtgtttttacttcagaattatttg |
251 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16026736 |
cgtgacaatcttttatgcctatgatcaccatcttttgaagtgtttttacttcagaatcatttg |
16026798 |
T |
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